Evidence map›Paper›PMID 41134724›Full record

ArticleDevelopmental neuroscience2025

Genetic Characterization of 128 Chinese Individuals with Neurodevelopmental Disorders via Whole-Exome Sequencing.

Yayun Qin, Huang Cao, Lijun Liu, Meiqi Yi, Ting Wang, Ling Zeng, Xiaoyan Wang, Runhong Xu, Chengcheng Zhang, Hui Li and 1 more

Abstract read
In one paragraph

Article in Developmental neuroscience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

11 authors.

Yayun QinMedical Genetics Center, Maternal and Child Health Hospital of Hubei Province, Wuhan, China.
Huang CaoMedical Genetics Center, Maternal and Child Health Hospital of Hubei Province, Wuhan, China.
Lijun LiuMedical Genetics Center, Maternal and Child Health Hospital of Hubei Province, Wuhan, China.
Meiqi YiMedical Genetics Center, Maternal and Child Health Hospital of Hubei Province, Wuhan, China.
Ting WangMedical Genetics Center, Maternal and Child Health Hospital of Hubei Province, Wuhan, China.
Ling ZengMedical Genetics Center, Maternal and Child Health Hospital of Hubei Province, Wuhan, China.
Xiaoyan WangMedical Genetics Center, Maternal and Child Health Hospital of Hubei Province, Wuhan, China.
Runhong XuMedical Genetics Center, Maternal and Child Health Hospital of Hubei Province, Wuhan, China.
Chengcheng ZhangMedical Genetics Center, Maternal and Child Health Hospital of Hubei Province, Wuhan, China.
Hui LiMedical Genetics Center, Maternal and Child Health Hospital of Hubei Province, Wuhan, China.
Jieping SongMedical Genetics Center, Maternal and Child Health Hospital of Hubei Province, Wuhan, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionNeurodevelopmental disorders (NDDs) are chronic conditions marked by abnormal brain development, presenting with significant clinical heterogeneity. Early diagnosis is crucial but challenging due to the complex symptoms. Genetic factors play a dominant role in NDD etiology. This study was to evaluate the diagnostic utility of dual-dimension whole-exome sequencing (WES) analysis in Chinese patients with NDDs and to deepen the understanding of genotype-phenotype correlations.

methodsThis study retrospectively analyzed WES data of 128 Chinese NDD patients from Hubei Maternal and Child Health Hospital (July 2020-March 2024) for single-nucleotide variants (SNVs)/small insertions-deletions (Indels) and copy number variants (CNVs). Pathway enrichment, tissue-expression analyses, and functional experiments were conducted to interpret pathogenic genes and variants of uncertain significance.

resultsThe overall diagnostic rate for NDDs was 35.9% (46/128), with 28 cases confirmed by SNV/Indel analysis (30 variants in 29 genes) and 18 by CNV analysis (22 variants). Dual-dimension analysis markedly improved the diagnostic rate compared to conventional SNV/Indel analysis (35.9% vs. 21.9%). Patients with multisystem abnormalities had a higher diagnostic rate (63.2% vs. 31.2%). Among the 30 SNV/Indel variants, 86.7% (26) were de novo, and 70.0% (21) were novel. Recurrent pathogenic variants in ASXL3, SHANK3, and EHMT1 genes were identified. Most pathogenic genes were enriched in transcription-regulation pathways and highly expressed in the cerebellum and cerebral cortex. Functional experiments showed that the NLGN3 c.562G>A (p.G188R) hemizygous variant affects protein stability and is deleterious, aiding prenatal diagnosis and the birth of a healthy offspring.

conclusionIntegrating CNV analysis into routine WES workflows effectively clarifies the genetic heterogeneity of NDDs, expands the gene variant spectrum, and provides a basis for NDD prognosis assessment and precision diagnosis and treatment.

Indexed as

Copy number variantsGenetic counselingNeurodevelopmental disordersVariants of uncertain significanceWhole-exome sequencing

Identifiers

PMID41134724
PMCPMC12707888

What Socratic holds

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