Evidence map›Paper›PMID 41148165›Full record

ArticleThe journal of physical chemistry. B2025

Cooperative Ligand-Mediated Transitions in Simple Macromolecules.

James L Martin Robinson, Neshat Moslehi, Nikolaos Dramountanis, Lennart van den Hoven, Alexander M van Silfhout, Kanvaly S Lacina, Mies van Steenbergen, Wessel Custers, Bas G P van Ravensteijn, Willem K Kegel

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

James L Martin RobinsonVan't Hoff Laboratory for Physical and Colloid Chemistry, Debye Institute for Nanomaterials Science, Utrecht University, 3584 CH Utrecht, The Netherlands.ORCID 0000-0001-7717-1746
Neshat MoslehiVan't Hoff Laboratory for Physical and Colloid Chemistry, Debye Institute for Nanomaterials Science, Utrecht University, 3584 CH Utrecht, The Netherlands.ORCID 0000-0003-2761-6449
Nikolaos DramountanisVan't Hoff Laboratory for Physical and Colloid Chemistry, Debye Institute for Nanomaterials Science, Utrecht University, 3584 CH Utrecht, The Netherlands.
Lennart van den HovenVan't Hoff Laboratory for Physical and Colloid Chemistry, Debye Institute for Nanomaterials Science, Utrecht University, 3584 CH Utrecht, The Netherlands.
Alexander M van SilfhoutVan't Hoff Laboratory for Physical and Colloid Chemistry, Debye Institute for Nanomaterials Science, Utrecht University, 3584 CH Utrecht, The Netherlands.ORCID 0000-0002-1666-6259
Kanvaly S LacinaVan't Hoff Laboratory for Physical and Colloid Chemistry, Debye Institute for Nanomaterials Science, Utrecht University, 3584 CH Utrecht, The Netherlands.
Mies van SteenbergenDepartment of Pharmaceutics, Utrecht Institute for Pharmaceutical Sciences (UIPS), Utrecht University, 3584 CG Utrecht, The Netherlands.
Wessel CustersVan't Hoff Laboratory for Physical and Colloid Chemistry, Debye Institute for Nanomaterials Science, Utrecht University, 3584 CH Utrecht, The Netherlands.
Bas G P van RavensteijnDepartment of Pharmaceutics, Utrecht Institute for Pharmaceutical Sciences (UIPS), Utrecht University, 3584 CG Utrecht, The Netherlands.ORCID 0000-0001-9024-3927
Willem K KegelVan't Hoff Laboratory for Physical and Colloid Chemistry, Debye Institute for Nanomaterials Science, Utrecht University, 3584 CH Utrecht, The Netherlands.ORCID 0000-0001-5890-270X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In biology, ligand-mediated transitions (LMT), where the binding of a molecular ligand onto the binding site of a receptor molecule leads to a well-defined change in the conformation of the receptor, are often referred to as "the second secret of life." Sharp, cooperative transitions arise in many biological cases, while examples of synthetic cooperative systems are rare. This is because well-defined conformational states are hard to "program" into a molecular design. Here, we impose an external constraint in the form of two immiscible liquids that effectively define and limit the available conformational states of two different synthetic and relatively simple macromolecules. We show that the mechanism of the observed cooperative transitions with ligand concentration is the coupling of ligand binding and conformation, similar to more complex biological systems. The systems studied are (1) hydrophobic polyelectrolytes (HPE) which are (bio) polymers that consist of hydrophobic as well as ionizable (proton and hydroxyl ligand binding) functional groups. (2) Oligomeric metal chelators (OMC), which are oligomers composed of metal ion chelating repeating groups that are able to bind metal ions (considered as the "ligands"), resulting in gel-like networks of oligomers cross-linked by coordinated metal ions. We find that in HPE, interactions between ligands and individual macromolecules explain the observed cooperative transitions. For OMC, coordinated bonds significantly enhance the degree of cooperativity, compared to HPE.

Identifiers

PMID41148165
PMCPMC12598847

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.