Evidence map›Paper›PMID 41160892›Full record

ArticleNucleic acids research2026

TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity.

Heike M Freese, Jan P Meier-Kolthoff, Joaquim Sardà Carbasse, Ayorinde O Afolayan, Markus Göker

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed.

  1. Article
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  5. Comparative Genome Mining ofMarine drugs · 2026
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  6. Whole-Genome Sequence Dataset ofMolecules (Basel, Switzerland) · 2026
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  7. Taxonomic revision of the genusInternational journal of systematic and evolutionary microbiology · 2026
    Article
  8. Annals of laboratory medicine · 2026
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  9. Article
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  11. International journal of systematic and evolutionary microbiology · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Journal of microbiology and biotechnology · 2026
    Article
  16. Article
  17. Article
  18. Microorganisms · 2026
    Article
  19. Article
  20. International journal of systematic and evolutionary microbiology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Heike M FreeseLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Department of Bioinformatics and Databases, Inhoffenstrasse 7B, 38124 Braunschweig, Germany.ORCID 0000-0002-4337-0453
Jan P Meier-KolthoffLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Department of Bioinformatics and Databases, Inhoffenstrasse 7B, 38124 Braunschweig, Germany.ORCID 0000-0001-9105-9814
Joaquim Sardà CarbasseLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Department of Bioinformatics and Databases, Inhoffenstrasse 7B, 38124 Braunschweig, Germany.
Ayorinde O AfolayanLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Department of Bioinformatics and Databases, Inhoffenstrasse 7B, 38124 Braunschweig, Germany.ORCID 0000-0003-1405-2365
Markus GökerLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Department of Bioinformatics and Databases, Inhoffenstrasse 7B, 38124 Braunschweig, Germany.ORCID 0000-0002-5144-6200

Funding

ICSPLPSN
6 · The paper itself

Abstract

The List of Prokaryotic names with Standing in Nomenclature (LPSN, https://lpsn.dsmz.de/) is an authoritative, expert-curated resource on prokaryotic nomenclature. Its sister database, the Type (Strain) Genome Server (TYGS, https://tygs.dsmz.de/), is a high-throughput platform for genome-based taxonomy. Here we present updates to these two platforms. New tools include improved interoperability with other DSMZ Digital Diversity databases, as well as easy-to-use query and access functions, and more comprehensive submission forms. The database content has expanded considerably, particularly through the inclusion of thousands of cyanobacterial names and the compilation of the List of Recommended Names for bacteria of medical importance (LoRN). LPSN now contains over 59 000 taxon names, and over 23 500 genome sequences have been added to TYGS. LPSN and TYGS have been updated to incorporate and reflect changes to the official rules governing prokaryotic nomenclature, as ratified by the International Committee on Systematics of Prokaryotes (ICSP) in recent years.

Indexed as

BacteriaDatabases, GeneticGenome, BacterialProkaryotic CellsTerminology as TopicGenomicsInternetSoftware

Identifiers

PMID41160892
PMCPMC12807606

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.