Evidence map›Paper›PMID 41162841›Full record

ArticleAutophagy2026

NRBF2 homodimerization by its coiled-coil domain strengthens association with the PtdIns3K complex mediated by the MIT domain to promote autophagy.

Na Li, Xiaohua Li, Xianxiu Qiu, Xuehua Pan, Shuai Wu, Jingyi Chen, Rong Liu, Jiahong Lu, Zhenyu Yue, Yanxiang Zhao

Abstract read
In one paragraph

Article in Autophagy, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Na LiDepartment of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Hong Kong, P. R. China.
Xiaohua LiInstitute of Advanced Biotechnology, Institute of Homeostatic Medicine and School of Medicine, Southern University of Science and Technology, Shenzhen, P. R. China.
Xianxiu QiuGuangdong Provincial Key Laboratory of Medical Molecular Diagnostics, Dongguan Key Laboratory of Medical Bioactive Molecular Developmental and Translational Research, Guangdong Medical University, Dongguan, P.R. China.
Xuehua PanShenzhen Pengcheng Biopharm Co., Ltd, Shenzhen, P.R. China.
Shuai WuDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Jingyi ChenThe Hong Kong Polytechnic University Shenzhen Research Institute, Shenzhen, P.R. China.
Rong LiuDepartment of Nutrition and Health, China Agricultural University, Beijing, P.R. China.
Jiahong LuState Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macau, P. R. China.
Zhenyu YueDepartment of Neurology and Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0001-8730-8515
Yanxiang ZhaoDepartment of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Hong Kong, P. R. China.ORCID 0000-0002-9408-9979

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mammalian class III phosphatidylinositol-3-kinase complex (PtdIns3K) forms two biochemically and functionally distinct subcomplexes including the ATG14-containing complex I (PtdIns3K-C1) and the UVRAG-containing complex II (PtdIns3K-C2). Both subcomplexes adopt a V-shaped architecture with a BECN1-ATG14 or UVRAG adaptor arm and a PIK3R4/VPS15-PIK3C3/VPS34 catalytic arm. NRBF2 is a pro-autophagic modulator that specifically associates with PtdIns3K-C1 to enhance its kinase activity and promotes macroautophagy/autophagy. How NRBF2 exerts such a positive effect is not fully understood. Here we report that NRBF2 binds to PIK3R4/VPS15 with moderate affinity through a conserved site on its N-terminal MIT domain. The NRBF2-PIK3R4/VPS15 interaction is incompatible with the UVRAG-containing PtdIns3K-C2 because the C2 domain of UVRAG outcompetes NRBF2 for PIK3R4/VPS15 binding. Our crystal structure of the NRBF2 coiled-coil (CC) domain reveals a symmetric homodimer with multiple hydrophobic pairings at the CC interface, which is in distinct contrast to the asymmetric dimer observed in the yeast ortholog Atg38. Mutations in the CC domain that rendered NRBF2 monomeric led to weakened binding to PIK3R4/VPS15 and only partial rescue of autophagy deficiency in

Indexed as

AutophagyClass III Phosphatidylinositol 3-KinasesProtein MultimerizationAutophagy-Related ProteinsHumansProtein BindingProtein DomainsTrans-ActivatorsVacuolar Sorting Protein VPS15Autophagy-Related ProteinsClass III Phosphatidylinositol 3-KinasesNRBF2 protein, humanPIK3R4 protein, humanTrans-ActivatorsVacuolar Sorting Protein VPS15Autophagycoiled-coilMITNRBF2PIK3R4/VPS15PtdIns3K

Identifiers

PMID41162841
PMCPMC12758336

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.