Evidence map›Paper›PMID 41168259›Full record

ArticleScientific data2025

Whole genome sequencing data of 14 indigenous Greek goats.

Antiopi Tsoureki, Sofia Michailidou, Sotiria Vouraki, Evridiki Boukouvala, Georgios Arsenos, Ioannis Sakaridis

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Antiopi TsourekiInstitute of Applied Biosciences, Centre for Research and Technology Hellas, 57001, Thessaloniki, Greece.ORCID 0000-0001-5683-0044
Sofia MichailidouInstitute of Applied Biosciences, Centre for Research and Technology Hellas, 57001, Thessaloniki, Greece. michailidouso@certh.gr.ORCID 0000-0002-8250-0513
Sotiria VourakiLaboratory of Animal Production, Nutrition and Biotechnology, Department of Agriculture, School of Agriculture, University of Ioannina, 47100, Arta, Greece.
Evridiki BoukouvalaHellenic Agricultural Organization DIMITRA, Campus of Thermi, 57001, Thessaloniki, Greece.
Georgios ArsenosLaboratory of Animal Husbandry, School of Veterinary Medicine, Faculty of Health Sciences, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece.
Ioannis SakaridisHellenic Agricultural Organization DIMITRA, Campus of Thermi, 57001, Thessaloniki, Greece. sakaridis@elgo.gr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Goat farming is a significant livestock sector in Greece, which holds the largest population of goats in the European Union. This population is mainly composed of the Eghoria and Skopelos indigenous breeds, the first of which is characterized by great phenotypic diversity, while the second presents a more uniform phenotype. Both breeds are characterized by high levels of genetic diversity. However, data regarding their genetic structure are scarce, usually concerning a limited number of genetic loci. Here, we present the first whole genome sequencing data generated for 14 indigenous Greek goats. In total, 66.5 Gb of data were produced on a NovaSeq. 6000 Illumina sequencer, corresponding to 3.18X average coverage. After quality filtering, >99.7% of sequences mapped successfully to the goat reference genome. Variant calling identified approximately 14 million autosomal variants of high-quality. These data can be used for the genetic improvement of the national herd through selective breeding schemes and, subsequently, improve the sustainability of the sector.

Indexed as

GenomeGoatsWhole Genome SequencingAnimalsBreedingGenetic VariationGreece

Identifiers

PMID41168259
PMCPMC12575873

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.