Evidence map›Paper›PMID 41169044›Full record

ArticleBiophysical journal2026

Frequency-dependent cellular microrheology with pyramidal atomic force microscopy probes.

Erika A Ding, Sanjay Kumar

Abstract read
In one paragraph

Article in Biophysical journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors.

Erika A DingDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California.
Sanjay KumarDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California; Department of Bioengineering, University of California, Berkeley, Berkeley, California; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, California. Electronic address: skumar@berkeley.edu.

Funding

Biophysical Control of Cell Form and Function by Single Actomyosin Stress Fibers: Instrument SupplementR01GM122375 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KUMAR, SANJAY · 2017 to 2025
$2.7M
NIGMS NIH HHS R01 GM122375
6 · The paper itself

Abstract

Atomic force microscopy (AFM) is widely used to measure the elastic properties of living cells, typically by extracting the Young's (elastic) modulus from force-indentation curves acquired at a fixed loading rate. However, it is increasingly clear that cells relax applied stresses over time and exhibit significant frequency-dependent loss properties, a phenomenon that figures centrally in many biological problems. AFM has been employed to capture these dynamic mechanical properties via microscale frequency sweeps, where the AFM probe indents the sample in an oscillatory fashion over a range of frequencies, and the oscillatory sample response is recorded. The relationship between dynamic stress and strain is then used to extract frequency-dependent microrheological properties. Despite the power of AFM oscillatory microrheology, the method remains surprisingly underutilized. This may be due to the traditional call for sphere-tipped AFM probes, which produce comparatively low indentation pressures yet are often expensive to purchase and difficult to fabricate. There remains a need for a framework in which standard blunt pyramidal AFM probes can be used "off the shelf" for oscillatory microrheology. In this study, we present such a formalism. We derive expressions to extract rheological moduli from the data and explore practical experimental issues such as calibration and parameter optimization, validating the method using agarose hydrogel standards. Finally, we perform mechanical measurements on cultured cells treated with cytoskeletal inhibitors nocodazole and cytochalasin D, which yield rheological changes consistent with expected contributions of the corresponding cytoskeletal networks.

Indexed as

Microscopy, Atomic ForceRheologyAnimalsCytochalasin DElastic ModulusNocodazoleStress, MechanicalCytochalasin DNocodazole

Identifiers

PMID41169044
PMCPMC13507361

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.