Dynamic transcriptome analysis during early development of black rockfish (Sebastes schlegelii).

Zheng Zhang, Xishan Li, Tingting He, Yaming Zhang, Shuangqiao Yu, Hongyu Pu, Wei Wang, Xuejie Li

Abstract read

In one paragraph

Article in Fish physiology and biochemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it

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0citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

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0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Zheng ZhangCollege of Environmental Sciences and Engineering, Dalian Maritime University, Dalian, 116026, China.

Xishan LiCollege of Environmental Sciences and Engineering, Dalian Maritime University, Dalian, 116026, China.

Tingting HeKey Laboratory of Applied Biology and Aquaculture of Northern Fishes in Liaoning Province, Dalian Ocean University, No.52, Heishijiao Street, Shahekou District, Dalian, 116023, China.

Yaming ZhangKey Laboratory of Applied Biology and Aquaculture of Northern Fishes in Liaoning Province, Dalian Ocean University, No.52, Heishijiao Street, Shahekou District, Dalian, 116023, China.

Shuangqiao YuKey Laboratory of Applied Biology and Aquaculture of Northern Fishes in Liaoning Province, Dalian Ocean University, No.52, Heishijiao Street, Shahekou District, Dalian, 116023, China.

Hongyu PuKey Laboratory of Applied Biology and Aquaculture of Northern Fishes in Liaoning Province, Dalian Ocean University, No.52, Heishijiao Street, Shahekou District, Dalian, 116023, China.

Wei WangKey Laboratory of Applied Biology and Aquaculture of Northern Fishes in Liaoning Province, Dalian Ocean University, No.52, Heishijiao Street, Shahekou District, Dalian, 116023, China. wangwei@dlou.edu.cn.

Xuejie LiKey Laboratory of Applied Biology and Aquaculture of Northern Fishes in Liaoning Province, Dalian Ocean University, No.52, Heishijiao Street, Shahekou District, Dalian, 116023, China. lixuejie@dlou.edu.cn.

Funding

Applied Basic Research Program of Liaoning Province 2022JH2/101300139Open Foundation of Dalian Jinshiwan Laboratory DLjswkf202411

6 · The paper itself

Abstract

The black rockfish (Sebastes schlegelii), an important species in aquaculture, has experienced significant population declines due to habitat degradation and overfishing. Despite its rapid growth making it attractive for aquaculture, larval rearing remains challenging, as high-density culture conditions frequently lead to skeletal deformities and slowed growth. To elucidate the molecular mechanisms supporting this fast growth and developmental transitions, we profiled transcriptomic changes across three developmental stages (n = 3 per stage): larval (5 days post-hatching, dph), post-larval (21 dph), and juvenile (45 dph). RNA-Seq generated 56.77 Gb of clean data, resulting in 21,837 annotated unigenes. Differential expression analysis (|log

Indexed as

FishesGene Expression Regulation, DevelopmentalPerciformesTranscriptomeAnimalsGene Expression ProfilingLarvaAquacultureEarly developmentSebastes schlegeliiTranscriptomeTranscriptomic changes

Identifiers

PMID41182369

DOI10.1007/s10695-025-01592-x

What Socratic holds

Textmetadata

Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.