Evidence map›Paper›PMID 41195088›Full record

ArticleBioinformatics advances2025

Revealing tissue architecture through the hypercomplex Fourier analysis of spatial transcriptomics data.

Hildreth Robert Frost

Abstract read
In one paragraph

Article in Bioinformatics advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Hildreth Robert FrostBiomedical Data Science, Dartmouth College, Hanover, NH 03755, United States.ORCID https://orcid.org/0000-0002-6794-9945

Funding

Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Fred W Kolling IV · 1985 to 2026
$91.3M
Zhao - Proj 2P20GM130454 · NIGMS · DARTMOUTH COLLEGE · PI Li Song · 2019 to 2026
$27.2M
Gene set analysis of single cell genomicsR35GM146586 · NIGMS · DARTMOUTH COLLEGE · PI Hildreth Frost · 2022 to 2026
$2.0M
Cancer-specific gene set testingR21CA253408 · NCI · DARTMOUTH COLLEGE · PI FROST, HILDRETH · 2020 to 2020
$451k
NCI NIH HHS P30 CA023108NCI NIH HHS R21 CA253408NIGMS NIH HHS P20 GM130454NIGMS NIH HHS R35 GM146586
6 · The paper itself

Abstract

Motivation: We present an approach for analyzing spatial transcriptomics (ST) data using a quaternion-domain discrete Fourier transform. Quaternions are four-dimensional hypercomplex numbers that have been primarily employed to represent rotations in computer graphics with biomedical applications focused on biomolecule structure and orientation. Results: According to our proposed model, the quaternion associated with each location in an ST dataset represents a vector in Availability and implementation: An implementation of this model, support for the hypercomplex Fourier analysis of ST data, and example vignettes are included in the QSC R package (https://hrfrost.host.dartmouth.edu/QSC/).

Identifiers

PMID41195088
PMCPMC12584982

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.