Evidence map›Paper›PMID 41206759›Full record

ArticleBioinformatics (Oxford, England)2025

GBA Solver: a user-friendly web server for growth balance analysis.

Sajjad Ghaffarinasab, Hugo Dourado

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Sajjad GhaffarinasabInstitute for Computer Science and Department of Biology, Heinrich Heine University, Düsseldorf, D-40225, Germany.ORCID 0000-0003-2544-708X
Hugo DouradoInstitute for Computer Science and Department of Biology, Heinrich Heine University, Düsseldorf, D-40225, Germany.ORCID 0000-0003-4851-1355

Funding

Deutsche ForschungsgemeinschaftEuropean Union
6 · The paper itself

Abstract

summaryGBA Solver is a web-based application that enables efficient construction and numerical solution of coarse-grained growth balance analysis (GBA) models containing up to 20 reactions. The platform features an intuitive spreadsheet-based interface that eliminates the need for programming, integrates kinetic parameters from the BRENDA enzyme database, and provides interactive visualizations for model exploration. By lowering technical barriers, GBA Solver makes GBA modeling accessible to a wider scientific community, expanding the computational toolkit for investigating cell metabolism and growth. AVAILABILITY AND IMPLEMENTATION: GBA Solver is freely available at: https://cellgrowthsim.com/. The source code is available at: https://doi.org/10.5281/zenodo.17250925.

Indexed as

Computational BiologyModels, BiologicalSoftwareInternetUser-Computer Interface

Identifiers

PMID41206759
PMCPMC12638059

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.