Evidence mapPaperPMID 41207908Full record

ArticleDigestive diseases and sciences2026

Deciphering Cancer Evolution Through Genomic Profiling of Patient-Derived Xenograft Together with Matched Primary Gallbladder Cancer.

Vipin Yadav, Ragini Kilambi, Archana Rastogi, Deepti Sharma, Perumal Nagarajan, Varun Suroliya, Anupam Bhattacharya, Vaishali Yadav, Pramod Gautam, Manju Kashayp and 5 more

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Article in Digestive diseases and sciences, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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5 · Who and what money

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15 authors.

Vipin YadavDepartment of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, D1 Vasant Kunj, New Delhi, 110070, India.
Ragini KilambiDepartment of Hepatopancreatobiliary Surgery, Institute of Liver and Biliary Sciences, New Delhi, India.
Archana RastogiDepartment of Pathology, Institute of Liver and Biliary Sciences, New Delhi, India.
Deepti SharmaDepartment of Radiation Oncology, Institute of Liver and Biliary Sciences, New Delhi, India.
Perumal NagarajanNational Institute of Immunology, New Delhi, India.
Varun SuroliyaDepartment of Molecular Genetics, Artemis Education and Research Foundation, Artemis Hospital, Gurugram, India.
Anupam BhattacharyaDepartment of Molecular Genetics, Artemis Education and Research Foundation, Artemis Hospital, Gurugram, India.
Vaishali YadavDepartment of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, D1 Vasant Kunj, New Delhi, 110070, India.
Pramod GautamDepartment of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, D1 Vasant Kunj, New Delhi, 110070, India.
Manju KashaypAmity Stem Cell Institute, Amity Medical School, Amity University Haryana, Panchgaon Manesar, Gurugram, Haryana, India.
Manoj Kumar KashyapAmity Stem Cell Institute, Amity Medical School, Amity University Haryana, Panchgaon Manesar, Gurugram, Haryana, India.
Vanya GargDepartment of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, D1 Vasant Kunj, New Delhi, 110070, India.
Anupama KumariDepartment of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, D1 Vasant Kunj, New Delhi, 110070, India.
Nirupama TrehanpatiDepartment of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, D1 Vasant Kunj, New Delhi, 110070, India.
Gayatri RamakrishnaDepartment of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, D1 Vasant Kunj, New Delhi, 110070, India. gayatriramakrishna@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGallbladder cancer has a poor prognosis due to its aggressive nature and late detection. Adenosquamous subtypes are rare and poorly characterized at the molecular level. Patient-derived xenograft (PDX) models preserve tumor heterogeneity and support evolutionary studies. Longitudinal specimens-primary, metastatic, and PDX-from the same patient, combined with immunohistochemistry (IHC), allow investigation of tumor progression and cellular origin. METHODOLOGY: A 65-year-old woman with gallbladder cancer underwent cholecystectomy, followed by omental metastasectomy upon relapse. A single-cell suspension from the metastatic lesion was injected into NOD-SCID mice to generate a PDX model. IHC assessed marker expression in primary, metastatic, and PDX tumors. A targeted next-generation sequencing somatic panel analyzed clonal evolution.

resultsP63 confirmed the adenosquamous subtype. The PDX model retained histopathological and marker features of the primary and metastatic tumors. Diagnostic (CK7, CK17, Muc1, Muc5AC) and prognostic markers (EpCAM, CRP, S100P, AQP1, Podoplanin) were preserved across all tumors. Genomic analysis identified KRAS (G12V) mutation as the main oncogenic driver and LRP1B (Q48R) mutation as a putative tumor suppressor retained in all tumors. The secondary tumor acquired PIK3CA (E65D) and LRP1B (G37437) mutations. The PDX gained mutations in chromatin remodeling genes ARID2, ARID1A, and BAP1. Clonal trajectory analysis identified four subclones, indicating branched and linear evolution patterns.

conclusionWe successfully established a PDX model of gallbladder adenosquamous carcinoma, with KRAS (G12V) identified as a potential initiating mutation, and the probable tumor-initiating cell is derived from an EpCAM-positive putative cancer stem cell. Sequential analysis revealed the emergence of resistant clones and adaptive selection of chromatin remodelers in the PDX model.

Indexed as

Carcinoma, AdenosquamousGallbladder NeoplasmsAgedAnimalsBiomarkers, TumorFemaleGenomicsHumansMiceMice, Inbred NODMice, SCIDMutationProto-Oncogene Proteins p21(ras)Biomarkers, TumorKRAS protein, humanProto-Oncogene Proteins p21(ras)Adenosquamous carcinomaClonal evolutionGenetic landscapePatient-derived xenograftPrognostic marker

Identifiers

PMID41207908

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.