Evidence map›Paper›PMID 41219569›Full record

ArticleNature cardiovascular research2025

Single-cell profiling reveals three endothelial-to-hematopoietic transitions with divergent isoform expression landscapes.

Wen Hao Neo, Muhammad Zaki Hidayatullah Fadlullah, Harshangda Bhatnagar, Cristiana Barone, Giulia Quattrini, Filipa Timóteo-Ferreira, Joana Carrelha, Gianluca Sala, Robert Sellers, John Weightman and 9 more

Abstract read
In one paragraph

Article in Nature cardiovascular research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Wen Hao Neo *Stem Cell Biology Group, Cancer Research UK Manchester Institute, The University of Manchester, Manchester, UK.
Muhammad Zaki Hidayatullah Fadlullah *Stem Cell Biology Group, Cancer Research UK Manchester Institute, The University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0002-3111-8090
Harshangda BhatnagarStem Cell Biology Group, Cancer Research UK Manchester Institute, The University of Manchester, Manchester, UK.
Cristiana BaroneSchool of Medicine and Surgery, University of Milano-Bicocca, Monza, Italy.
Giulia QuattriniSchool of Medicine and Surgery, University of Milano-Bicocca, Monza, Italy.
Filipa Timóteo-FerreiraSchool of Medicine and Surgery, University of Milano-Bicocca, Monza, Italy.ORCID http://orcid.org/0000-0002-9454-162X
Joana CarrelhaHaematopoietic Stem Cell Biology Laboratory, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Gianluca SalaSchool of Medicine and Surgery, University of Milano-Bicocca, Monza, Italy.
Robert SellersComputational Biology Support, Cancer Research UK Manchester Institute, The University of Manchester, Manchester, UK.
John WeightmanMolecular Biology Core Facility, Cancer Research UK Manchester Institute, The University of Manchester, Manchester, UK.
Wolfgang BreitwieserMolecular Biology Core Facility, Cancer Research UK Manchester Institute, The University of Manchester, Manchester, UK.
Natalia MoncautGenome Editing and Mouse Models, Cancer Research UK Manchester Institute, The University of Manchester, Manchester, UK.
Roshana ThambyrajahStem Cell Biology Group, Cancer Research UK Manchester Institute, The University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0002-3941-760X
Sten Eirik W JacobsenHaematopoietic Stem Cell Biology Laboratory, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-1362-3659
Mudassar IqbalDivision of Informatics, Imaging and Data Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester, UK.
Syed Murtuza BakerDivision of Informatics, Imaging and Data Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0002-6633-333X
Emanuele AzzoniSchool of Medicine and Surgery, University of Milano-Bicocca, Monza, Italy.ORCID http://orcid.org/0000-0002-4572-5692
Michael Lie-A-LingStem Cell Biology Group, Cancer Research UK Manchester Institute, The University of Manchester, Manchester, UK. Michael.Lie-a-ling@cruk.manchester.ac.uk.ORCID http://orcid.org/0000-0003-0194-4313
Georges LacaudStem Cell Biology Group, Cancer Research UK Manchester Institute, The University of Manchester, Manchester, UK. Georges.Lacaud@cruk.manchester.ac.uk.ORCID http://orcid.org/0000-0002-5630-2417

Funding

Cancer Research UK (CRUK) C5759/A20971Fondazione Cariplo (Cariplo Foundation) 2018-0102Forskningsrådet om Hälsa, Arbetsliv och Välfärd (Swedish Research Council for Health, Working Life and Welfare) 538-2013-8995RCUK | Medical Research Council (MRC) MC_UU_12009/5Sveriges Läkarförbund (Swedish Medical Association) 538-2013-8995Worldwide Cancer Research 24-0083
6 · The paper itself

Abstract

Hemogenic endothelium (HE) is recognized as the origin of all definitive blood cells, including hematopoietic stem cells (HSCs); however, the mechanisms governing the hematopoietic progenitor versus HSC fate choice within the HE remain unknown. Here we combine differentiation assays with full-length single-cell transcriptome data for extra-embryonic yolk sac (YS) and intra-embryonic aorta-gonad-mesonephros (AGM) region HE populations. We identified and localized three differentiation trajectories, each containing a distinct HE subset: erythromyeloid progenitor-primed HE in the YS plexus, lymphomyeloid progenitor-primed HE in large YS arteries and hematopoietic stem and progenitor cell-primed HE in the AGM. Chromatin modifiers and spliceosome components were enriched in AGM HE. This correlated with a higher isoform complexity of the AGM HE transcriptome. Distinct AGM HE-specific isoform expression patterns were observed for a broad range of genes, including stemness-associated factors like Runx1. Our data form a unique resource for studying cell fate decisions in different HE populations.

Indexed as

Cell DifferentiationCell LineageHemangioblastsHematopoiesisHematopoietic Stem CellsSingle-Cell AnalysisTranscriptomeAnimalsAortaCore Binding Factor Alpha 2 SubunitGene Expression ProfilingGene Expression Regulation, DevelopmentalMesonephrosMiceProtein IsoformsYolk SacCore Binding Factor Alpha 2 SubunitProtein Isoforms

Identifiers

PMID41219569
PMCPMC12708354

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.