Evidence map›Paper›PMID 41233496›Full record

ArticleCommunications biology2025

Conformational alteration of DOCK5•ELMO1 signalosome on lipid membrane.

Takehiro Shinoda, Kazushige Katsura, Yoshiko Ishizuka-Katsura, Kazuharu Hanada, Mayumi Yonemochi, Yuki Miyamoto, Mutsuko Kukimoto-Niino, Junji Yamauchi, Mikako Shirouzu

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Targeting of ELMO2 by thebioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Takehiro ShinodaLaboratory for Functional and Structural Biology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan.ORCID http://orcid.org/0000-0003-0297-2471
Kazushige KatsuraLaboratory for Functional and Structural Biology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan.ORCID http://orcid.org/0000-0002-4333-0224
Yoshiko Ishizuka-KatsuraLaboratory for Functional and Structural Biology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan.
Kazuharu HanadaLaboratory for Functional and Structural Biology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan.
Mayumi YonemochiDrug Discovery Structural Biology Platform Unit, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan.
Yuki MiyamotoLaboratory of Molecular Pharmacology, National Research Institute for Child Health and Development, Tokyo, Japan.ORCID http://orcid.org/0000-0001-9298-5799
Mutsuko Kukimoto-NiinoLaboratory for Functional and Structural Biology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan.ORCID http://orcid.org/0000-0002-4178-1611
Junji YamauchiLaboratory of Molecular Neurology, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan.ORCID http://orcid.org/0000-0002-3618-998X
Mikako ShirouzuLaboratory for Functional and Structural Biology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan. mikako.shirouzu@riken.jp.ORCID http://orcid.org/0000-0002-7997-2149

Funding

MEXT | JST | Core Research for Evolutional Science and Technology (CREST) JPMJCR22E3
6 · The paper itself

Abstract

The DOCK protein family activates Rho small GTPases through guanine nucleotide exchange factor (GEF) activity. DOCK is thought to exert its GEF activity at the plasma membrane. However, the mechanism by which DOCK activity on the plasma membrane is regulated remains unclear. Herein, we present a new conformation in which DOCK5, ELMO1, RhoG, and Rac1 are aligned on a plane and symmetrically flattened, as revealed by cryo-EM using a lipid membrane-coated grid. The major conformational change leading to this structure results from rotation of each DOCK5•ELMO1 hinge site through interactions with the membrane. Biochemical and cellular experiments indicate that conformational changes driven by acidic lipids are important for regulating the GEF activity of the DOCK5•ELMO1 complex on the plasma membrane and are essential for its downstream signalling. This approach also enables the analysis of large lipid-associated complexes, such as signalosomes, and will aid studies of membrane-dependent signalling assemblies.

Indexed as

Adaptor Proteins, Signal TransducingCell MembraneGuanine Nucleotide Exchange FactorsMembrane LipidsCryoelectron MicroscopyHumansModels, MolecularProtein ConformationSignal TransductionAdaptor Proteins, Signal TransducingELMO1 protein, humanGuanine Nucleotide Exchange FactorsMembrane Lipids

Identifiers

PMID41233496
PMCPMC12615776

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.