Evidence map›Paper›PMID 41237758›Full record

ReviewCell2025

Bridging single cells to organs: Mesoscale modules as fundamental units of tissue function.

Yun Chen, Ronald N Germain, Ginger L Hunter, Rajan P Kulkarni, Arthur D Lander, Pedro Lowenstein, Jeremy E Purvis, Harikesh S Wong

Abstract readReview
In one paragraph

Review in Cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Mesoscale maladaptation in disease organoids.Disease models & mechanisms · 2026
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yun ChenDepartment of Mechanical Engineering, Johns Hopkins University, Baltimore, MD, USA. Electronic address: yun.chen@jhu.edu.
Ronald N GermainLaboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA. Electronic address: rgermain@niaid.nih.gov.
Ginger L HunterDepartment of Biology, Howard University, Washington, DC, USA.
Rajan P KulkarniDepartment of Dermatology, Cancer Early Detection Advanced Research Center (CEDAR), and Knight Cancer Institute, Oregon Health & Science University, Portland, OR, USA; Operative Care Division, VA Portland Health Care System, Portland, OR, USA.
Arthur D LanderDepartment of Developmental and Cell Biology, Center for Complex Biological Systems, University of California, Irvine, Irvine, CA, USA. Electronic address: adlander@uci.edu.
Pedro LowensteinDepartment of Neurosurgery, Cell and Developmental Biology, and Biomedical Engineering, The University of Michigan, Ann Arbor, MI, USA. Electronic address: pedrol@med.umich.edu.
Jeremy E PurvisDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Harikesh S WongRagon Institute of Mass General Brigham, MIT, and Harvard, Cambridge, MA, USA; Massachusetts Institute of Technology, Department of Biology, Cambridge, MA, USA. Electronic address: wonghs@mit.edu.

Funding

Shared Resource Core: Single Cell AnalysisU54CA217378 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D · 2018 to 2022
$9.7M
Understanding critical transitions in chronic myeloid leukemia to improve tyrosine kinase inhibitor therapyP01CA288662 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Arthur D Lander, Devon A. Lawson · 2025 to 2026
$6.4M
UCI P30 Skin Center Systems Biology CoreP30AR075047 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D · 2019 to 2025
$5.1M
UG Support Administrative Supplement: Computational Models of the Human Cell Cycle to Reveal Disease Mechanism and Inform TreatmentR01GM138834 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Jeremy Purvis · 2020 to 2026
$2.7M
The Role of Collagen and its Signaling Mechanisms in Glioma Progression and Invasion.R01NS122234 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Pedro R. Lowenstein · 2022 to 2026
$2.4M
Role of the collagen receptor LAIR-1 in glioma progression and the tumor immune microenvironmentR01NS127378 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Pedro R. Lowenstein · 2022 to 2026
$1.8M
Supplement to Mechanisms of cellular morphogenesis that coordinate signaling during tissue patterningR35GM150782 · NIGMS · HOWARD UNIVERSITY · PI HUNTER, GINGER LORAINE · 2023 to 2025
$1.2M
High-Throughput, Multiplexing-Ready Intracellular Pressure ProbesR21GM146105 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI CHEN, YUN, LIN, CHENXIANG · 2022 to 2023
$465k
Quantitative Hydrophobicity Sensor to Probe the Dynamics of Biomolecular CondensatesR21DA061446 · NIDA · JOHNS HOPKINS UNIVERSITY · PI CHEN, YUN · 2024 to 2025
$416k
Genetically Encoded Magnetometer for Intracellular Dynamic MeasurementR21GM154219 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI CHEN, YUN · 2024 to 2025
$414k
Genetics of neural precursor communication during development of the Drosophila peripheral nervous systemR03NS130395 · NINDS · CLARKSON UNIVERSITY · PI HUNTER, GINGER LORAINE · 2022 to 2022
$137k
CSRD VA I01 CX002750NCI NIH HHS P01 CA288662NCI NIH HHS U54 CA217378NIAMS NIH HHS P30 AR075047NIDA NIH HHS R21 DA061446NIGMS NIH HHS R01 GM138834NIGMS NIH HHS R21 GM146105NIGMS NIH HHS R21 GM154219NIGMS NIH HHS R35 GM150782NINDS NIH HHS R01 NS122234NINDS NIH HHS R01 NS127378NINDS NIH HHS R03 NS130395
6 · The paper itself

Abstract

Recent studies at molecular and genomic scales have enriched our understanding of life's most fundamental building block: the cell. However, bridging the gap between single-cell phenotypes and the emergent functions of tissues and organs remains a formidable challenge. Here, we suggest that the conceptual span from cells to tissues and organs is so large as to warrant intermediate stepping stones. Drawing inspiration from "network motifs"-discrete units of cell-level function that emerge from the interactions of a handful of genes or enzymes-we argue that similarly identifiable units of tissue-level function, which we term "mesoscale modules," emerge from coordinated "interactions" among relatively small numbers of cells and their extracellular milieu. We outline several such modules and propose that a concerted effort to study them will deepen our foundational understanding of tissue and organ functions. By developing these mesoscale insights, we anticipate a more tractable and mechanistic approach to complex human conditions rooted in tissue- and organ-scale dysregulation, including developmental defects, cancer, cardiovascular disease, immune-related disorders, infectious disease, and aging.

Indexed as

Single-Cell AnalysisAnimalsHumansemergent propertiesmesoscale modulesnetwork motifssystems biologytissue biology

Identifiers

PMID41237758
PMCPMC12769888

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.