Evidence map›Paper›PMID 41249260›Full record

ArticleScientific reports2025

Explainable convolutional neural network architectures for high-performance taxonomic classification of gasteroid macrofungi.

Eda Kumru, Fatih Ekinci, Abdullah Aydoğan, Mehmet Serdar Güzel, Mustafa Sevindik, Ilgaz Akata

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Eda KumruGraduate School of Natural and Applied Sciences, Ankara University, 06830, Ankara, Turkey.
Fatih EkinciInstitute of Artificial Intelligence, Ankara University, 06100, Ankara, Turkey.
Abdullah AydoğanDepartment of Computer Engineering, Faculty of Engineering, Ankara University, 06830, Ankara, Turkey.
Mehmet Serdar GüzelDepartment of Computer Engineering, Faculty of Engineering, Ankara University, 06830, Ankara, Turkey.
Mustafa SevindikDepartment of Biology, Faculty of Engineering and Natural Sciences, Osmaniye Korkut Ata University, Osmaniye, Turkey.
Ilgaz AkataDepartment of Biology, Faculty of Science, Ankara University, 06100, Ankara, Turkey. akata@science.ankara.edu.tr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gasteroid fungi represent a morphologically diverse and taxonomically challenging group due to their convergent evolution and closed fruiting bodies. This study presents a novel deep learning-based framework for the classification of six macrofungi species: Battarrea phalloides, Crucibulum laeve, Cyathus olla, C. striatus, Tulostoma brumale, and T. fimbriatum. A total of 1200 high-resolution images were processed using eleven convolutional neural networks (CNNs), each pre-trained on ImageNet and fine-tuned for this classification task. DenseNet121 emerged as the best-performing model with 96.11% accuracy, 96.09% F1-score, and an AUC of 99.89%. ResNeXt and RepVGG followed closely with accuracies of 95.00% and 93.89%, respectively. Operational metrics showed that ShuffleNetV2 achieved the fastest inference time (0.80 s), while RepVGG exhibited the highest energy efficiency (16.5%). Explainable AI techniques, including Grad-CAM and Guided Backpropagation, were applied to enhance model interpretability, revealing biologically meaningful image regions. These results demonstrate that deep learning architectures can be effectively applied to fungal taxonomy with high accuracy and transparency. Furthermore, the proposed methodology is scalable and adaptable to other biological domains such as fungal spore classification, plant pollen analysis, and rare species identification in ecological monitoring. This study offers a robust, interpretable, and computationally efficient solution for automating biodiversity assessments using image-based AI techniques.

Indexed as

Neural Networks, ComputerConvolutional Neural NetworksDeep LearningCNN classificationDeep learningExplainable AIGasteroid fungiImage-based taxonomy

Identifiers

PMID41249260
PMCPMC12623483

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.