Evidence map›Paper›PMID 41251139›Full record

ArticleNucleic acids research2026

SILVA in 2026: a global core biodata resource for rRNA within the DSMZ digital diversity.

Maria Chuvochina, Jan Gerken, Martinique Frentrup, Yeliz Sandikci, Robin Goldmann, Heike M Freese, Markus Göker, Johannes Sikorski, Pablo Yarza, Christian Quast and 3 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
  2. Article
  3. Humanizing Zophobas morio larvae microbiota for rapid screening of emerging decolonization strategies against multidrug-resistant bacteria.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Gut bacterial community profile of the endemic catfishMicrobiology resource announcements · 2026
    Article
  14. Article
  15. Article
  16. Article
  17. A Rushan Acid Whey-DerivedFoods (Basel, Switzerland) · 2026
    Article
  18. Article
  19. Effects ofAnimals : an open access journal from MDPI · 2026
    Article
  20. From Composition to Function: Lime Essential Oil (Molecules (Basel, Switzerland) · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Maria ChuvochinaLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, D-38124, Braunschweig, Germany.ORCID 0000-0002-3977-6012
Jan GerkenLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, D-38124, Braunschweig, Germany.ORCID 0000-0002-3005-7185
Martinique FrentrupLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, D-38124, Braunschweig, Germany.
Yeliz SandikciLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, D-38124, Braunschweig, Germany.ORCID 0009-0007-5519-2061
Robin GoldmannLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, D-38124, Braunschweig, Germany.ORCID 0009-0002-8921-957X
Heike M FreeseLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, D-38124, Braunschweig, Germany.ORCID 0000-0002-4337-0453
Markus GökerLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, D-38124, Braunschweig, Germany.ORCID 0000-0002-5144-6200
Johannes SikorskiLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, D-38124, Braunschweig, Germany.
Pablo YarzaBioinfile SL, Alicante, 03540, Spain.ORCID 0000-0001-5716-9403
Christian QuastRibocon GmbH, D-28359, Bremen, Germany.
Jörg PepliesRibocon GmbH, D-28359, Bremen, Germany.ORCID 0000-0001-6154-4886
Frank Oliver GlöcknerMARUM-Center for Marine Environmental Sciences, University of Bremen, D-28359, Bremen, Germany.ORCID 0000-0001-8528-9023
Lorenz Christian ReimerLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, D-38124, Braunschweig, Germany.ORCID 0000-0002-7805-0660

Funding

Federal Ministry of ResearchGerman Network for Bioinformatics Infrastructure
6 · The paper itself

Abstract

Since 2007, the SILVA database (https://www.arb-silva.de/) has served as a comprehensive resource providing quality-checked, aligned, and classified ribosomal RNA sequences for the scientific community worldwide. The database provides manually curated taxonomic classifications for the three domains of life, standardized reference datasets, and tools for classifying microbial diversity. SILVA's impact has been recognized in its designation as ELIXIR Core Data Resource and Global Core Biodata Resource. The integration of SILVA into the DSMZ Digital Diversity consortium (D3; https://hub.dsmz.de) in 2023 marked a significant update, ensuring the long-term sustainability and continued development of the resource. Apart from moving to a new hosting institution, this integration facilitates data interoperability and standardization among SILVA, LPSN, StrainInfo, and other D3 databases. New developments this year include a redesigned website consistent with the DSMZ corporate identity, DOI assignments for all SILVA releases to enhance data citation and support the FAIR data principles, and the provisioning of QIIME2, DADA2, and KRAKEN2 classifiers. Additionally, the EukMap application has been redeveloped as a curation and visualization tool called TaxMap. In anticipation of the next data release, we outline recent developments and the current state of the database, its relation with other D3 resources, and its future directions.

Indexed as

Databases, GeneticDatabases, Nucleic AcidRNA, RibosomalBacteriaInternetSoftwareRNA, Ribosomal

Identifiers

PMID41251139
PMCPMC12807666

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.