Evidence map›Paper›PMID 41266396›Full record

ArticleScientific data2025

Telomere-to-telomere genome assembly of the Fraxinus mandshurica Rupr.

Dandan Zhang, Siyang Guo, Zicheng Zhang, Wa Gao, Xiyang Zhao, Mingwei Tang, Yanming Zhang, Qun Cai, Qiang Tian, Fang Luo and 1 more

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Dandan Zhang *Heilongjiang Institute of Atomic Energy, Harbin, China.
Siyang Guo *Jilin Agricultural University, Changchun, China.
Zicheng ZhangHeilongjiang Institute of Atomic Energy, Harbin, China.
Wa GaoHeilongjiang Institute of Atomic Energy, Harbin, China.
Xiyang ZhaoJilin Agricultural University, Changchun, China.
Mingwei TangHeilongjiang Institute of Atomic Energy, Harbin, China.
Yanming ZhangJilin Forest Industry Hongshi Forestry Co., Ltd. National Forest Seed Base, Huadian, China.
Qun CaiJilin Provincial Forest Tree Seeds and Seedlings Management Station, Changchun, China.
Qiang TianJilin Provincial Forest Tree Seeds and Seedlings Management Station, Changchun, China.
Fang LuoJilin Provincial Forest Tree Seeds and Seedlings Management Station, Changchun, China.
Hongtao ZhaoHeilongjiang Institute of Atomic Energy, Harbin, China. zhaohongtao1976@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fraxinus mandshurica Rupr, an important timber species, is widely distributed throughout northeastern China. In our study, we assembled the telomere-to-telomere (T2T) genome of F. mandshurica, generated by using Illumina short-read, PacBio HiFi long-read and Hi-C sequencing. The genome size was 781.40 Mb and the scaffold N50 length was 34.29 Mb. 39 contigs were reliably scaffolded into 23 T2T chromosomes. More than 98.70% of the BUSCO genes from the embryophyta_odb12 dataset were successfully hit in the genome. We found that 61.01% of the sequences were repetitive, and 35,009 protein-coding genes were annotated, more than 99.22% were successfully functionally detected. Overall, this T2T-level genome assembly provides a valuable genomic platform that will facilitate studies of evolutionary biology, functional genomics, and molecular breeding in F. mandshurica.

Indexed as

FraxinusGenome, PlantTelomereChina

Identifiers

PMID41266396
PMCPMC12635175

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.