ArticleWellcome open research2025
Pf8: an open dataset of
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Article in Wellcome open research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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13citing papers in PubMed
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Who cites it
13 citing papers in PubMed.
- Molecular surveillance of multiplicity of infection, haplotype frequencies, and prevalence in infectious diseases.PLoS computational biology · 2026Article
- Article
- Conserved genetic and antigenic profiles of Pf12 and Pf41 in asymptomatic Plasmodium falciparum carriers in Tanzania.Scientific reports · 2026Article
- AbioRxiv : the preprint server for biology · 2026Article
- Global-scale population genetic analysis of Plasmodium falciparum identifies region-specific patterns of malaria parasite adaptation.Nature communications · 2026Article
- Impact of intensive control on malaria population genomics under elimination settings in Southeast Asia.Nature microbiology · 2026Article
- Double Mutations inbioRxiv : the preprint server for biology · 2026Article
- hmmibd-rs: an enhanced hmmIBD implementation for parallelizable identity-by-descent detection from large-scale Plasmodium genomic data.Malaria journal · 2026Article
- Rare variation in malaria parasites biases population-genetic inference.bioRxiv : the preprint server for biology · 2026Article
- Genomic population structure and insecticide resistance mechanisms in the malaria vector An. coluzzii across contrasting bioclimatic zones in West Africa.BMC genomics · 2026Article
- upsML: A high-accuracy machine learning classifier for predicting Plasmodium falciparum var gene upstream groups.PloS one · 2026Article
- Mapping the prevalence of molecular markers ofmedRxiv : the preprint server for health sciences · 2025Article
- Towards an evolutionary baseline model ofbioRxiv : the preprint server for biology · 2025Article
Corrections and comments
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Authors and funding
115 authors.
Malaria Genomic Epidemiology Network (MalariaGEN)
Muzamil Mahdi Abdel HamidInstitute of Endemic Diseases, University of Khartoum, Khartoum, Sudan.
Mohamed Hassan AbdelraheemInstitute of Endemic Diseases, University of Khartoum, Khartoum, Sudan.
Desmond Omane AcheampongDepartment of Biomedical Sciences, School of Allied Health Sciences, University of Cape Coast, Cape Coast, Ghana.ORCID https://orcid.org/0000-0001-8197-2618
Ishag AdamUniversity of Khartoum, Khartoum, Sudan.
Pedro AideCentro de Investigacao em Saude de Manhica, Manhica, Maputo Province, Mozambique.
Olusola AjibayeNigerian Institute of Medical Research, Lagos, Nigeria.ORCID https://orcid.org/0000-0002-3888-2366
Mozam AliWellcome Sanger Institute, Hinxton, England, UK.
Jacob Almagro-GarciaGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.
Alfred Amambua-NgwaWellcome Sanger Institute, Hinxton, England, UK.
Lucas Amenga-EtegoWest African Centre for Cell Biology of Infectious Pathogens (WACCBIP), University of Ghana, Legon, Ghana.ORCID https://orcid.org/0000-0003-4468-0506
Ifeyinwa AnieboHealth Strategy and Delivery Foundation, Abuja, Nigeria.
Enoch AninagyeiDepartment of Biomedical Sciences, School of Basic and Biomedical Sciences, University of Health and Allied Sciences, Ho, Ghana.ORCID https://orcid.org/0000-0002-6489-167X
Felix AnsahWest African Centre for Cell Biology of Infectious Pathogens (WACCBIP), University of Ghana, Legon, Ghana.
Tobias O ApinjohUniversity of Buea, Buea, Cameroon.
Cristina V ArianiGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.
Sarah AuburnMenzies School of Health Research, Charles Darwin University, Darwin, Northern Territory, Australia.
Gordon A AwandareWest African Centre for Cell Biology of Infectious Pathogens (WACCBIP), University of Ghana, Legon, Ghana.
Andrew BalmerGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.
Philip BejonKEMRI-Wellcome Trust Research Programme, Nairobi, Kenya.ORCID https://orcid.org/0000-0002-2135-7549
Simone BoeneCentro de Investigacao em Saude de Manhica, Manhica, Maputo Province, Mozambique.ORCID https://orcid.org/0000-0002-8323-9863
George BwireDepartment of Pharmaceutical Microbiology, Muhimbili University of Health and Allied Sciences, Dar es Salaam, Tanzania.
Baltazar CandrinhoNational Malaria Control Programme, Maputo, Mozambique.
Arlindo ChidimatembueCentro de Investigacao em Saude de Manhica, Manhica, Maputo Province, Mozambique.
Keobouphaphone ChindavongsaCenter of Malariology, Parasitology and Entomology, Vientiane, Lao People's Democratic Republic.
Kiba ComicheCentro de Investigacao em Saude de Manhica, Manhica, Maputo Province, Mozambique.
David ConwayLondon School of Hygiene & Tropical Medicine, London, England, UK.ORCID https://orcid.org/0000-0002-8711-3037
Antoine DaraUniversity of Science, Techniques and Technologies of Bamako, Bamako, Mali.
Mahamadou DiakiteMalaria Research and Training Centre, University of Science, Techniques and Technologies of Bamako, Bamako, Mali.ORCID https://orcid.org/0000-0002-4268-8857
Abdoulaye DjimdeMalaria Research and Training Centre, University of Science, Techniques and Technologies of Bamako, Bamako, Mali.ORCID https://orcid.org/0000-0003-0062-2283
Arjen DondorpMahidol Oxford Tropical Medicine Research Unit, Bangkok, Thailand.ORCID https://orcid.org/0000-0001-5190-2395
Seydou DoumbiaMalaria Research and Training Centre, University of Science, Techniques and Technologies of Bamako, Bamako, Mali.
Eleanor DruryWellcome Sanger Institute, Hinxton, England, UK.
Caterina A FanelloMahidol Oxford Tropical Medicine Research Unit, Bangkok, Thailand.ORCID https://orcid.org/0000-0003-1932-9562
Mike FerdigDepartment of Biological Sciences, University of Notre Dame, Notre Dame, Indiana, USA.
Katherine FigueroaGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.
Dionicia GamboaLaboratorio de Malaria: Parasitos y vectores, Laboratorios de Investigacion y Desarrollo, Facultad de Ciencias e Ingenieria, Universidad Peruana Cayetano Heredia, Lima, Peru.
Lemu GolassaAklilu Lemma Institute of Pathobiology, Addis Ababa University, Addis Ababa, Ethiopia.
Sónia GonçalvesWellcome Sanger Institute, Hinxton, England, UK.
Merepen Dite Agnes GuindoInternational Center for Excellence in Research, Faculty of Medicine and Odontostomatology, University of Sciences, Techniques and Technologies of Bamako, Bamako, Mali.
Mainga HamalubaKEMRI-Wellcome Trust Research Programme, Nairobi, Kenya.ORCID https://orcid.org/0000-0002-0266-1414
Borimas HanboonkunupakarnMahidol Oxford Tropical Medicine Research Unit, Bangkok, Thailand.
Kevin HoweGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.
Maazza HussienInstitute of Endemic Diseases, University of Khartoum, Khartoum, Sudan.
Mallika ImwongMahidol University, Bangkok, Thailand.
Deus IshengomaNational Institute for Medical Research, Dar es Salaam, Tanzania.
Julia JeansGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.
Alinune KabagheKamuzu University of Health Sciences, Blantyre, Malawi.
Appolinary KamuhabwaDepartment of Clinical Pharmacy and Pharmacology, Muhimbili University of Health and Allied Sciences, Dar es Salaam, Tanzania.
Jean-Marie KindermansMédecins Sans Frontières Operational Center, Brussels, Belgium.
Drissa S KonateInternational Center for Excellence in Research, Faculty of Medicine and Odontostomatology, University of Sciences, Techniques and Technologies of Bamako, Bamako, Mali.ORCID https://orcid.org/0000-0002-4177-9642
Dominic P KwiatkowskiWellcome Sanger Institute, Hinxton, England, UK.
Chiyun LeeGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.
Samuel K LeeThe Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Sue J LeeMahidol Oxford Tropical Medicine Research Unit, Bangkok, Thailand.ORCID https://orcid.org/0000-0002-8409-4248
Benedikt LeyMenzies School of Health Research, Charles Darwin University, Darwin, Northern Territory, Australia.ORCID https://orcid.org/0000-0002-5734-0845
Alejandro Llanos-CuentasUniversidad Peruana Cayetano Heredia, Lima, Peru.ORCID https://orcid.org/0000-0002-7567-5534
Jutta MarfurtMenzies School of Health Research, Charles Darwin University, Darwin, Northern Territory, Australia.
Glória MatambissoCentro de Investigacao em Saude de Manhica, Manhica, Maputo Province, Mozambique.
Rapeephan Rattanawongnara MaudeMahidol Oxford Tropical Medicine Research Unit, Bangkok, Thailand.
Richard James MaudeMahidol Oxford Tropical Medicine Research Unit, Bangkok, Thailand.ORCID https://orcid.org/0000-0002-5355-0562
Alfredo MayorCentro de Investigacao em Saude de Manhica, Manhica, Maputo Province, Mozambique.
Mayfong MayxayUniversity of Oxford Centre for Tropical Medicine and Global Health, Oxford, England, UK.ORCID https://orcid.org/0000-0002-6056-4516
Oumou Maïga-AscofaréMalaria Research and Training Centre, University of Science, Techniques and Technologies of Bamako, Bamako, Mali.
Robert S McCannCenter for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Alistair MilesGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.
Olivo MiottoMahidol Oxford Tropical Medicine Research Unit, Bangkok, Thailand.
Abdelrahim Osman MohamedUniversity of Khartoum Faculty of Medicine, Khartoum, Sudan.ORCID https://orcid.org/0000-0003-0840-1637
Collins Misita Morang'aWest African Centre for Cell Biology of Infectious Pathogens (WACCBIP), University of Ghana, Legon, Ghana.ORCID https://orcid.org/0000-0002-6988-150X
Kathryn MurieEPPIcenter Research Program, Division of HIV, Infectious Diseases, and Global Medicine, University of California San Francisco Department of Medicine, San Francisco, California, USA.
Billy Ephraim NgasalaDepartment of Parasitology and Medical Entomology, Muhimbili University of Health and Allied Sciences, Dar es Salaam, Tanzania.ORCID https://orcid.org/0000-0001-9300-7719
Thuy-Nhien NguyenUniversity of Oxford Centre for Tropical Medicine and Global Health, Oxford, England, UK.ORCID https://orcid.org/0000-0002-4101-5706
Oscar NolascoUniversidad Peruana Cayetano Heredia, Lima, Peru.
Francois NostenUniversity of Oxford Centre for Tropical Medicine and Global Health, Oxford, England, UK.ORCID https://orcid.org/0000-0002-7951-0745
Rintis NoviyantiEijkman Institute for Molecular Biology, Central Jakarta, Jakarta, Indonesia.
Ísla O'ConnorGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.
Mary ObohMedical Research Council Unit The Gambia at the London School of Hygiene and Tropical Medicine, Banjul, The Gambia.
Lynette Isabella Ochola-OyierKEMRI-Wellcome Trust Research Programme, Nairobi, Kenya.
Catherine Olufunke FaladeFaculty of Basic and Clinical Sciences, University of Ibadan College of Medicine, Ibadan, Nigeria.
Adeola OlukosiNigerian Institute of Medical Research, Lagos, Nigeria.
Ajibola OlumideFirst Technical University, Ibadan, Nigeria.
Fiyinfoluwa I OlusolaDepartment of Pharmacology & Therapeutics, University of Ibadan, Ibadan, Nigeria.
Marie A OnyambokoKinshasa School of Public Health, University of Kinshasa, Kinshasa, Democratic Republic of the Congo.ORCID https://orcid.org/0000-0002-7501-5931
Eniyou Cheryll OrieroMedical Research Council Unit The Gambia at the London School of Hygiene and Tropical Medicine, Banjul, The Gambia.
Wellington Aghoghovwia OyiboUniversity of Lagos College of Medicine, Lagos, Nigeria.
Danielle PannebakerUS Naval Medical Research Unit SOUTH, Parasitology Department, Lima, Peru.
Richard D PearsonGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.ORCID https://orcid.org/0000-0002-7386-3566
Kamija PhiriKamuzu University of Health Sciences, Blantyre, Malawi.ORCID https://orcid.org/0000-0003-1753-2727
Rob W van der PluijmMahidol Oxford Tropical Medicine Research Unit, Bangkok, Thailand.
Ric N PriceMenzies School of Health Research, Charles Darwin University, Darwin, Northern Territory, Australia.ORCID https://orcid.org/0000-0003-2000-2874
Huynh Hong QuangInstitute of Malariology, Parasitology, and Entomology (IMPE), Ministry of Health Vietnam, Quy Nhon, Vietnam.
Vinoth Rajkumar DevarajuGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.
Milijaona RandrianarivelojosiaUnité de Parasitologie, Institut Pasteur de Madagascar, Antananarivo, Madagascar.ORCID https://orcid.org/0000-0003-2767-0349
Lisa Ranford-CartwrightSchool of Biodiversity, One Health and Veterinary Medicine, University of Glasgow College of Medical Veterinary and Life Sciences, Glasgow, Scotland, UK.ORCID https://orcid.org/0000-0003-1992-3940
Julian C RaynerCambridge Institute for Medical Research, University of Cambridge, Cambridge, UK.ORCID https://orcid.org/0000-0002-9835-1014
Eduard Rovira-VallbonaISGlobal, Barcelona, Spain.ORCID https://orcid.org/0000-0002-4765-1076
Katherine RowlandsGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.
Valentin Ruano-RubioThe Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Juan F SanchezUS Naval Medical Research Unit SOUTH, Parasitology Department, Lima, Peru.
Francisco SaúteCentro de Investigacao em Saude de Manhica, Manhica, Maputo Province, Mozambique.
Shuwaram ShettimaModibbo Adama University Teaching Hospital, Yola, Nigeria.
Clemente da SilvaCentro de Investigacao em Saude de Manhica, Manhica, Maputo Province, Mozambique.
Victoria J SimpsonGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.
Simon SuddabyWellcome Sanger Institute, Hinxton, England, UK.
Willem TakkenDepartment of Entomology, Wageningen University & Research, Wageningen, The Netherlands.
Aung Myint ThuShoklo Malaria Research Unit, Mahidol Oxford Tropical Medicine Research Unit Faculty of Tropical Medicine Mahidol University, Mae Sot, Thailand.
Mahamoudou ToureMalaria Research and Training Centre, University of Science, Techniques and Technologies of Bamako, Bamako, Mali.
Eyyub UnluGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.
Hugo O ValdiviaUS Naval Medical Research Unit SOUTH, Parasitology Department, Lima, Peru.ORCID https://orcid.org/0000-0003-2159-5667
Michele van VugtAcademic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.
Naomi WaithiraMahidol Oxford Tropical Medicine Research Unit, Bangkok, Thailand.ORCID https://orcid.org/0000-0002-2267-9347
Thomas WellemsLaboratory of Malaria & Vector Research (LMVR), National Institute of Allergy and Infectious Diseases Division of Intramural Research National Institutes of Health, Maryland, USA.ORCID https://orcid.org/0000-0003-3899-8454
Jason WendlerSeattle Children's Hospital, Seattle, Washington, USA.
Nina WhiteGenomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, England, UK.ORCID https://orcid.org/0000-0001-7110-7874
Rachel Wuendrich OgidanWellcome Sanger Institute, Hinxton, England, UK.
Funding
Sequencing and Genomics CoresU19AI089696 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI KROGSTAD, DONALD JOHN · 2010 to 2016
$10.6MMultidisciplinary Implementation Research for malaria control and elimination in West AfricaU19AI129387 · NIAID · UNIV OF SCIENCES, TECH & TECH OF BAMAKO · PI Mahamoudou Toure · 2017 to 2026
$8.2MGates Foundation INV-001927Gates Foundation INV-007590NIAID NIH HHS U19 AI089696NIAID NIH HHS U19 AI129387Wellcome Trust
Abstract
We describe the Pf8 data resource, the latest MalariaGEN release of curated genome variation data on over 33,000
Indexed as
data resourcegenomic epidemiologygenomicsgenomic surveillancemalariaopen data sharingPlasmodium falciparum
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.