Evidence map›Paper›PMID 41269261›Full record

ArticleArchives of microbiology2025

Inhibition of MMP-2/MMP-9 and biofilm formation by 4,5,7-trihydroxyflavanone (THF): a promising therapeutic approach against Enterococcus gallinarum endocarditis.

Zeeshan Hyderi, Hemavathy Nagarajan, Kiruthika Saravanan, Sathiyaraj Ganesan, Jeyakanthan Jeyaraman, Sampathkumar Ranganathan, Arumugam Veera Ravi

Abstract read
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Article in Archives of microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zeeshan HyderiLab in Microbiology and Marine Biotechnology, Department of Biotechnology, Alagappa University, Karaikudi, 630003, India.ORCID http://orcid.org/0000-0001-7036-1002
Hemavathy NagarajanStructural Biology and Bio-Computing Lab, Department of Bioinformatics, Science Block, Alagappa University, Karaikudi, Tamil Nadu, 630003, India.
Kiruthika SaravananLab in Microbiology and Marine Biotechnology, Department of Biotechnology, Alagappa University, Karaikudi, 630003, India.
Sathiyaraj GanesanCentral Aquaculture Pathology Laboratory, Rajiv Gandhi Centre for Aquaculture (RGCA), TTTACMPEDA, Sirkazhi, Nagapattinam, 609109, India.
Jeyakanthan JeyaramanStructural Biology and Bio-Computing Lab, Department of Bioinformatics, Science Block, Alagappa University, Karaikudi, Tamil Nadu, 630003, India.
Sampathkumar RanganathanCentre for Bioinformatics, KBIRVO, Vision Research Foundation, Chennai, India. drsampath@snmail.org.ORCID http://orcid.org/0000-0001-5029-6282
Arumugam Veera RaviLab in Microbiology and Marine Biotechnology, Department of Biotechnology, Alagappa University, Karaikudi, 630003, India. veeraravia@alagappauniversity.ac.in.ORCID http://orcid.org/0000-0002-4768-8389

Funding

Rashtriya Uchchatar Shiksha Abhiyan EBSB-RUSA 2.0, PhD fellowship
6 · The paper itself

Abstract

Biofilm formation and antimicrobial resistance (AMR) are critical global health concerns, necessitating the discovery of novel therapeutic compounds. Enterococcus gallinarum, an opportunistic pathogen intrinsically resistant to vancomycin, is responsible for severe infections, often leading to endocarditis, bloodstream dissemination, immune dysregulation, and tissue damage. The limited efficacy of existing treatments underscores the urgent need for alternative therapeutic strategies. Recently, we reported the efficacy of 4,5,7-trihydroxyflavanone (THF) as an exhibited potential antimicrobial agent. In this study, the antibiofilm activity of THF against E. gallinarum was examined. In addition, the role of THF in preventing infection and mortality in zebrafish was also analysed using histopathological studies. The host-drug interaction was investigated through a network pharmacology approach for bacterial endocarditis. The top hub genes found in this analysis were docked with THF using the Glide XP protocol, and simulations were performed by GROMACS version 2020. The results suggest the potential of THF in inhibiting bacterial adhesion to extracellular matrix (ECM) and the disruption of mature biofilms. The histopathological results showed significantly recovered tissues after THF treatment. Furthermore, the network pharmacology studies of bacterial endocarditis disease revealed the identification of top hub genes MMP-2 and MMP-9, which have the function of binding to ECM and causing inflammation. The molecular docking and dynamics simulations performed between MMP-2 & MMP-9 showed a strong binding score of -4.652 kcal/mol & -7.597 kcal/mol between THF and MMP-2 & MMP-9, suggesting the anti-inflammatory potential of THF as well. This significant influence on host-pathogen interactions, particularly in modulating immune responses and inflammation, makes it a promising drug candidate for bacterial infections and necessitates its consideration for future research and studies.

Indexed as

Anti-Bacterial AgentsBiofilmsEndocarditis, BacterialEnterococcusFlavanonesGram-Positive Bacterial InfectionsMatrix Metalloproteinase 2Matrix Metalloproteinase 9Matrix Metalloproteinase InhibitorsAnimalsHumansMolecular Docking SimulationZebrafishAnti-Bacterial AgentsFlavanonesMatrix Metalloproteinase 2Matrix Metalloproteinase 9Matrix Metalloproteinase Inhibitors4,5,7-trihydroxyflavanone, MMP-2 & MMP-9BiofilmEndocarditisEnterococcus gallinarumNetwork pharmacologyZebrafish histopathology

Identifiers

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.