Evidence map›Paper›PMID 41270088›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2026

Functional, Pharmacogenomic, and Immune Landscapes of Long Non-Coding RNAs in Cancer.

Runhao Wang, Mei Luo, Yuan Liu, Jingwen Yang, Yamei Chen, Chengxuan Chen, Lifei Ma, Stephanie Ding, James Wengler, Yong Zang and 6 more

Abstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Functional, Pharmacogenomic, and Immune Landscapes of Long Non-Coding RNAs in Cancer.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Runhao WangDepartment of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Mei LuoDepartment of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Yuan LiuDepartment of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Jingwen YangDepartment of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Yamei ChenDepartment of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Chengxuan ChenDepartment of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Lifei MaDepartment of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Stephanie DingDepartment of Psychological and Brain Sciences, College of Arts and Sciences, Indiana University, Bloomington, IN, 47405, USA.
James WenglerCenter for Epigenetics and Disease Prevention, Institute of Biosciences and Technology, Texas, A&M University, Houston, TX, 77030, USA.
Yong ZangDepartment of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Bora LimDepartment of Breast Medical Oncology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd, Houston, TX, 77030, USA.
Wenbo LiDepartment of Biochemistry and Molecular Biology, The University of Texas Health Science Center Houston, Houston, TX, 77030, USA.
Liuqing YangThe Graduate School of Biomedical Sciences, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.
Chunru LinThe Graduate School of Biomedical Sciences, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.
Lixia DiaoDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.
Leng HanDepartment of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.ORCID https://orcid.org/0000-0002-7380-2640

Funding

Beyond Gene Dosage: Understanding Down Syndrome via 4D Genome OrganizationU01HL156059 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LI, WENBO · 2020 to 2024
$3.1M
Long Noncoding RNA Advocates Immune Resistant MicroenvironmentR01CA231011 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI LIN, CHUNRU · 2019 to 2023
$2.9M
Targeting Small Nucleolar RNA Augments Immunotherapeutic EfficacyR01CA255080 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Chunru Lin · 2022 to 2026
$2.3M
Elucidating T Cell Ferroptosis in Renal Medullary Carcinoma: 3D Genome Architecture Rewiring and Therapeutic AlleviationR01CA285454 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Wenbo Li, Pavlos Msaouel · 2024 to 2026
$2.0M
Systematic Characterization of Small Nucleolar RNAs in CancerR01CA262623 · NCI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI HAN, LENG · 2021 to 2025
$2.0M
Mechanisms Underlying Enhancer Rnp Mediated Gene Regulation And Genome OrganizationR01GM136922 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LI, WENBO · 2020 to 2024
$2.0M
Molecular Mechanisms of Bladder Cancer ImmunometabolismR01CA269489 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Jianjun Gao, Liuqing Yang · 2023 to 2026
$2.0M
MolQTL: A comprehensive resource for molecular quantitative trait loci inhuman cancer.R01HG011633 · NHGRI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI HAN, LENG · 2021 to 2025
$1.9M
Molecular Mechanism of long Noncoding RNAs in PhenylketonuriaR01HD110520 · NICHD · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI VERNON R SUTTON, Liuqing Yang · 2023 to 2026
$1.9M
Novel Roles of TAZ and YAP in DNA Damage Repair with 3D Genome Organization and the Therapeutic Resistance in GlioblastomaR01NS127922 · NINDS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Krishna PL Bhat, Wenbo Li · 2023 to 2026
$1.8M
DoD DMDRP Idea Development Award MD200001HESI THRIVE award 61561National Science Foundation #2 137 603National Science Foundation #2 138 259National Science Foundation #2 138 286National Science Foundation #2 138 296National Science Foundation #2 138 307NCI NIH HHS R01 CA231011NCI NIH HHS R01 CA255080NCI NIH HHS R01 CA262623NCI NIH HHS R01 CA269489NCI NIH HHS R01 CA285454NHGRI NIH HHS R01 HG011633NHLBI NIH HHS U01 HL156059NICHD NIH HHS R01 HD110520NIGMS NIH HHS R01 GM136922NIH HHS R01CA269489NIH HHS R01CA285454NIH HHS R01HD110520NIH R01 R01GM136922NIH R01 R01NS127922NIH R01 U01HL156059NINDS NIH HHS R01 NS127922the National Institutes of Health (NIH) R01CA262623the National Institutes of Health (NIH) R01HG011633Welch Foundation AU-2000-20220331
6 · The paper itself

Abstract

Long non-coding RNAs (lncRNAs) are emerging as key regulators in cancer, with significant potential as diagnostic, prognostic, and therapeutic targets. Here, this work systematically analyzes lncRNA associations with targeted therapies and immunotherapies across 33 cancer types using The Cancer Genome Atlas (TCGA) and real-world datasets. This work identifies 53,173 lncRNA-pathway associations, millions of lncRNA-drug response associations (via CancerRxTissue and VAEN), and extensive correlations with immune checkpoints and infiltration. This work further identifies 69 lncRNAs associated with immunotherapy response and 2,611 differentially expressed lncRNAs between low and high objective response rate (ORR) groups. Additionally, two lncRNAs are correlated with immune-related adverse events (irAEs), and 1,376 lncRNAs exhibited expression differences between cancers with low and high irAE risk. To facilitate further research, this work develops PILNC (https://hanlaboratory.com/PILNC), a comprehensive web portal enabling exploration of lncRNA associations with cancer pathways, drug responses, immune features, and immunotherapy outcomes.

Indexed as

NeoplasmsRNA, Long NoncodingGene Expression Regulation, NeoplasticHumansImmunotherapyPharmacogeneticsRNA, Long Noncodingcancer signaling pathwaysdrug responseimmune checkpointsimmune infiltrationimmunotherapy efficacyirAELncRNAs

Identifiers

PMID41270088
PMCPMC12866694

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.