Evidence map›Paper›PMID 41270126›Full record

ArticlePLoS neglected tropical diseases2025

Genetic features of Orthonairovirus haemorrhagiae variants detected in ixodid ticks in Armenia.

Anna Volynkina, Yana Lisitskaya, Anna Zhirova, Olga Gnusareva, Ekaterina Vasilenko, Lyudmila Shaposhnikova, Sergey Pisarenko, Arsen Manucharyan, Gayane Melik-Andreasyan, Vladimir Dedkov and 2 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Anna VolynkinaStavropol Research Antiplague Institute, Federal Service for the Oversight of Consumer Protection and Welfare, Stavropol, Russia.ORCID 0000-0001-5554-5882
Yana LisitskayaStavropol Research Antiplague Institute, Federal Service for the Oversight of Consumer Protection and Welfare, Stavropol, Russia.
Anna ZhirovaStavropol Research Antiplague Institute, Federal Service for the Oversight of Consumer Protection and Welfare, Stavropol, Russia.
Olga GnusarevaStavropol Research Antiplague Institute, Federal Service for the Oversight of Consumer Protection and Welfare, Stavropol, Russia.
Ekaterina VasilenkoStavropol Research Antiplague Institute, Federal Service for the Oversight of Consumer Protection and Welfare, Stavropol, Russia.
Lyudmila ShaposhnikovaStavropol Research Antiplague Institute, Federal Service for the Oversight of Consumer Protection and Welfare, Stavropol, Russia.
Sergey PisarenkoStavropol Research Antiplague Institute, Federal Service for the Oversight of Consumer Protection and Welfare, Stavropol, Russia.
Arsen ManucharyanNational Center for Disease Control and Prevention, Armenian Ministry of Health, Yerevan, Armenia.
Gayane Melik-AndreasyanNational Center for Disease Control and Prevention, Armenian Ministry of Health, Yerevan, Armenia.
Vladimir DedkovSaint Petersburg Pasteur Institute, Federal Service for the Oversight of Consumer Protection and Welfare, Saint Petersburg, Russia.
Anna DolgovaSaint Petersburg Pasteur Institute, Federal Service for the Oversight of Consumer Protection and Welfare, Saint Petersburg, Russia.
Alexander KulichenkoStavropol Research Antiplague Institute, Federal Service for the Oversight of Consumer Protection and Welfare, Stavropol, Russia.

Funding

Russian Science Foundation
6 · The paper itself

Abstract

introductionCrimean-Congo hemorrhagic fever (CCHF) is a viral transmissible febrile disease, featuring hemorrhagic manifestations and a high mortality rate, caused by Orthonairovirus haemorrhagiae (CCHFV). CCHF is endemic in the Republic of Armenia (RA) and neighboring countries. Currently, there is no genetic information on CCHFV circulating in the RA. This work presents the results of genetic identification of CCHF viral variants detected in ixodid ticks collected in 2022-2023. METHODOLOGY: Ixodid ticks were collected from cattle, horses, and vegetation in seven Armenian regions (Vayots Dzor, Gegharkunik, Kotayk, Lori, Syunik, Tavush, Shirak). Tick pools were tested for the presence of CCHFV RNA by RT-PCR. Genetic identification of CCHFV isolates was performed based on partial and complete genomic segment sequencing (S, M, L).

resultsOf 860 total tick pools, 77 were positive for CCHFV RNA. Such RNA was detected in Hyalomma marginatum (n = 71), Haemaphysalis punctate (n = 2), Ixodes ricinus (n = 2), Rhipicephalus bursa (n = 2). CCHFV circulation was confirmed in the Syunik and Tavush regions. Phylogenetic analysis based on partial and full-length genomic segments showed that CCHFV strains of the Europe 1 and Europe 3 lineages circulated in the RA. Within the Europe 1 lineage, Armenian viral isolates belonged to different genetic subgroups: Vb, strains of which are widespread in the south of the European region of Russia; and new subgroups (Armenia-1, Armenia-2). Genomic segment reassortment events were revealed in the analyzed CCHFV sequences.

conclusionThis study provides new data on CCHFV genetic diversity in the RA. Further genetic studies of CCHFV circulating in countries of the Transcaucasian region are necessary to reconstruct the temporal and spatial viral distribution.

Indexed as

Endemic DiseasesHemorrhagic Fever, CrimeanHemorrhagic Fever Virus, Crimean-CongoIxodidaeAnimalsArmeniaCattleDisease VectorsGenetic VariationGenome, ViralGeographyHorsesPhylogenyRNA, ViralRNA, Viral

Identifiers

PMID41270126
PMCPMC12668625

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.