Evidence map›Paper›PMID 41272461›Full record

ArticleBMC plant biology2025

Comparative genomics and evolutionary insights in divergence and expression of CYP450 super gene family in citrus (C. sinensis, C. grandis&P. trifoliata).

Arfa Tanveer, Rana Muhammad Atif, Sultan Habibullah Khan, Iqrar Ahmad Rana

Abstract readComparative Study
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Arfa TanveerCenter of Agricultural Biotechnology and Biochemistry, University of Agriculture Faisalabad, Faisalabad, 38000, Pakistan.
Rana Muhammad AtifCentre for Advanced Studies in Agriculture and Food Security, University of Agriculture Faisalabad, Faisalabad, 38000, Pakistan.
Sultan Habibullah KhanCenter of Agricultural Biotechnology and Biochemistry, University of Agriculture Faisalabad, Faisalabad, 38000, Pakistan.
Iqrar Ahmad RanaCenter of Agricultural Biotechnology and Biochemistry, University of Agriculture Faisalabad, Faisalabad, 38000, Pakistan. iqrar_rana@uaf.edu.pk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytochrome P450 supergene family members play a significant role in the synthesis of various compounds that support plant growth, development and biosynthetic pathways. A combined genome-wide analysis of this gene family across three citrus species: C. sinensis (Cs), C. grandis (Cg), and P. trifoliata (Pt) was performed. 510 members of the P450 gene family in citrus species, with amino acid lengths ranging from 292 to 1260aa, molecular weights between 33.32 and 153.91 kDa, and isoelectric points between 6.67 and 9.47 were identified. The phylogenetic tree divided this superfamily into 43 subfamilies, which were further classified into clans.Based on the number of identified genes, C. sinensis and C. grandis have 8 clans, while P. trifoliata has 6 clans.Subcellular localization results revealed that members of the P450 gene family were randomly distributed across a variety of organelles. One to twenty conserved motifs were found. The number of introns and exons differed among species in relation to gene length. Cis-regulatory elements in the promoter regions of all species were linked to various types of stresses, especially abiotic stresses. During synteny analysis, divergence and col-linearity relationships were observed among the genes of three species. PPI network analysis showed strong interactions among all CYPs. Moreover, expression analysis under biotic and abiotic stress conditions revealed high variation in gene expression, with more significant changes observed under abiotic stress conditions compared to biotic stresses. This study gives insight of the Cytochrome P450 super gene family in C. sinensis under heat stress.

Indexed as

CitrusCytochrome P-450 Enzyme SystemEvolution, MolecularMultigene FamilyPlant ProteinsGene Expression Regulation, PlantGenomicsPhylogenyCytochrome P-450 Enzyme SystemPlant ProteinsAbiotic stressesCitrusClansCytochrome P450Heat stress

Identifiers

PMID41272461
PMCPMC12636149

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.