Evidence map›Paper›PMID 41277693›Full record

ArticleNucleic acids research2025

Biophysical and biological properties of splice-switching oligonucleotides and click conjugates containing LNA-phosphothiotriester linkages.

Debashis Dhara, Alyssa C Hill, Abinaya Ramesh, Diallo Traore, Ewa Radzikowska-Cieciura, Matthew J A Wood, Tom Brown

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Debashis DharaDepartment of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom.ORCID 0000-0001-8501-7060
Alyssa C HillDepartment of Paediatrics, Institute of Developmental and Regenerative Medicine (IDRM), University of Oxford, Oxford OX3 7TY, United Kingdom.ORCID 0000-0002-4767-5780
Abinaya RameshDepartment of Paediatrics, Institute of Developmental and Regenerative Medicine (IDRM), University of Oxford, Oxford OX3 7TY, United Kingdom.
Diallo TraoreDepartment of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom.
Ewa Radzikowska-CieciuraDepartment of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom.ORCID 0000-0001-9060-4200
Matthew J A WoodDepartment of Paediatrics, Institute of Developmental and Regenerative Medicine (IDRM), University of Oxford, Oxford OX3 7TY, United Kingdom.ORCID 0000-0002-5436-6011
Tom BrownDepartment of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom.ORCID 0000-0002-6538-3036

Funding

MRC MR/X008029/1University of Oxford
6 · The paper itself

Abstract

Antisense oligonucleotides hold great promise in the treatment of disease, but their efficacy is limited by modest bioavailability and toxicity. Charge-neutral phosphorus-based backbones can potentially improve biological properties, but oligonucleotides with such modifications are challenging to synthesize. Here, we report the straightforward synthesis of a range of oligonucleotides containing multiple LNA alkyl phosphothiotriester nucleotides and evaluate their biophysical and biological properties. Several functional groups were incorporated into the triester linkages, including 2-butyl, 2-hexyl, 3-octyl, 4-trifluoromethyl cyclohex-1-yl, hexadecyl, and 4-pentyn-2-yl. The alkyne triesters were functionalized with carbohydrates, amino acids, heptaethylene glycol, spermine, and thiazole orange through CuAAC click chemistry. Analysis of over 60 oligonucleotides showed that almost all displayed excellent duplex stability with both complementary DNA and RNA and good splice-switching activity in an in vitro reporter assay. Amino acid conjugates showed significantly higher activity than carbohydrate conjugates via gymnosis.

Indexed as

OligonucleotidesOligonucleotides, AntisenseRNA SplicingClick ChemistryEstersHumansEsterslocked nucleic acidOligonucleotidesOligonucleotides, Antisense

Identifiers

PMID41277693
PMCPMC12641260

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.