Evidence mapPaperPMID 41279104Full record

ArticlebioRxiv : the preprint server for biology2025

International Mouse Phenotyping Consortium: Investigating gene function and providing insights into human disease.

Robert Wilson, Tuğba Bülbül Ataç, Tsz Kwan Cheng, Anthony Frost, Osman Güneş, Marina Kan, Piia Keskivali-Bond, Federico López Gómez, James McLaughlin, Jakub Mucha and 10 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors.

Robert WilsonEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton, CB10 1SD, UK.
Tuğba Bülbül AtaçMary Lyon Centre at MRC Harwell, Harwell Campus, Oxfordshire, OX11 0RD, UK.
Tsz Kwan ChengMary Lyon Centre at MRC Harwell, Harwell Campus, Oxfordshire, OX11 0RD, UK.
Anthony FrostMary Lyon Centre at MRC Harwell, Harwell Campus, Oxfordshire, OX11 0RD, UK.
Osman GüneşEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton, CB10 1SD, UK.
Marina KanEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton, CB10 1SD, UK.
Piia Keskivali-BondMary Lyon Centre at MRC Harwell, Harwell Campus, Oxfordshire, OX11 0RD, UK.
Federico López GómezEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton, CB10 1SD, UK.
James McLaughlinEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton, CB10 1SD, UK.ORCID 0000-0002-8361-2795
Jakub MuchaMary Lyon Centre at MRC Harwell, Harwell Campus, Oxfordshire, OX11 0RD, UK.
Tawanda MunavaMary Lyon Centre at MRC Harwell, Harwell Campus, Oxfordshire, OX11 0RD, UK.
Carla OliveiraEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton, CB10 1SD, UK.
Diego PavaClinical Pharmacology and Precision Medicine, William Harvey Research Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, EC1M 6BQ, UK.
Jose Francisco Peña EstradaEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton, CB10 1SD, UK.
Ewan SelkirkMary Lyon Centre at MRC Harwell, Harwell Campus, Oxfordshire, OX11 0RD, UK.
Bora VardalMary Lyon Centre at MRC Harwell, Harwell Campus, Oxfordshire, OX11 0RD, UK.
Sara WellsMary Lyon Centre at MRC Harwell, Harwell Campus, Oxfordshire, OX11 0RD, UK.
Pilar CacheiroClinical Pharmacology and Precision Medicine, William Harvey Research Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, EC1M 6BQ, UK.
Damian SmedleyClinical Pharmacology and Precision Medicine, William Harvey Research Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, EC1M 6BQ, UK.
Helen ParkinsonEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Welcome Genome Campus, Hinxton, CB10 1SD, UK.

Funding

UniProt Partnerships with Common Fund Data Ecosystem Resources for Protein-Centric Functional GenomicsU24OD038424 · UNIVERSITY OF DELAWARE · 2025 to 2025
$1.3M
Mouse Phenotyping Informatics Infrastructure - Data acquisition, integration, analysis and translation of high throughput mammalian phenotyping data.UM1HG006370 · EUROPEAN MOLECULAR BIOLOGY LABORATORY · 2025 to 2025
$1.3M
NHGRI NIH HHS UM1 HG006370NIH HHS U24 OD038424
6 · The paper itself

Abstract

The International Mouse Phenotyping Consortium (IMPC; https://www.mousephenotype.org/) web portal contains phenotype data for mouse protein-coding genes derived from analysis of data obtained in a systematic and high-throughput fashion from knock-out lines produced by IMPC. The project has produced >1,400 mouse models of human disease that recapitulate phenotypes observed in patients. Over 8000 papers rely on data or reagents generated by IMPC, demonstrating the impact of the project on the research and clinical communities, and IMPC data is incorporated into other resources, such as MGI, Open Targets and UniProt. Data release (DR23.0, 2025) contains > 100 million data points from 9,277 genes and identified 113,803 significant phenotypes. To manage efficient access to this quantity of high dimensional data the IMPC web portal has been rebuilt using a cloud native architecture. The modern user interface retains the look and feel of the original portal with improvements identified through a usability study. New data visualisation and training materials for large scale data access through the API have also been developed to make the resource easier to use.

Identifiers

PMID41279104
PMCPMC12632475

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.