Evidence map›Paper›PMID 41279278›Full record

ArticlebioRxiv : the preprint server for biology2025

Coordinated circulating and tissue-based T cell responses precede xenograft rejection.

Ekaterina Novikova, Elizabeth Severa, Han Chen, Elizabeth Doepke, Fiorella Chacon, Farshid Fathi, Nathan Suek, Benjamin Vermette, Robin Bombardi, Eloi Schmauch and 19 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Ekaterina NovikovaDepartment of Medicine, NYU Grossman School of Medicine, New York, New York, USA.ORCID 0009-0006-1501-1142
Elizabeth SeveraDepartment of Medicine, NYU Grossman School of Medicine, New York, New York, USA.
Han ChenDepartment of Medicine, NYU Grossman School of Medicine, New York, New York, USA.
Elizabeth DoepkeDepartment of Medicine, NYU Grossman School of Medicine, New York, New York, USA.
Fiorella ChaconDepartment of Microbiology, NYU Grossman School of Medicine, New York, New York, USA.
Farshid FathiDepartment of Medicine, Columbia Center for Translational Immunology, Columbia University Medical Center, Columbia University; New York, NY, USA.
Nathan SuekDepartment of Medicine, Columbia Center for Translational Immunology, Columbia University Medical Center, Columbia University; New York, NY, USA.
Benjamin VermetteDepartment of Medicine, Columbia Center for Translational Immunology, Columbia University Medical Center, Columbia University; New York, NY, USA.
Robin BombardiIllumina, San Diego, CA, USA.
Eloi SchmauchBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Simon H WilliamsNew York University Langone Transplant Institute, New York, NY, USA.
Jacqueline I KimDepartment of Surgery, New York University Grossman School of Medicine, New York, NY, USA.
Imad AljabbanNew York University Langone Transplant Institute, New York, NY, USA.
Tal EitanNew York University Langone Transplant Institute, New York, NY, USA.
Ian S JaffeDepartment of Surgery, New York University Grossman School of Medicine, New York, NY, USA.
Grace HammondNew York University Langone Transplant Institute, New York, NY, USA.
Karen KhalilNew York University Langone Transplant Institute, New York, NY, USA.
Aprajita MattooDepartment of Medicine, Columbia Center for Translational Immunology, Columbia University Medical Center, Columbia University; New York, NY, USA.
Vasishta TatapudiNew York University Langone Transplant Institute, New York, NY, USA.
Edward SkolnikDepartment of Medicine, NYU Grossman School of Medicine, New York, New York, USA.
Elaina P WeldonNew York University Langone Transplant Institute, New York, NY, USA.
David AyaresUnited Therapeutics Corporation, Durham, NC.
Anoma NelloreDepartment of Medicine, NYU Grossman School of Medicine, New York, New York, USA.
Megan SykesDepartment of Medicine, Columbia Center for Translational Immunology, Columbia University Medical Center, Columbia University; New York, NY, USA.
Adam D GriesemerNew York University Langone Transplant Institute, New York, NY, USA.
Jeffrey M SternNew York University Langone Transplant Institute, New York, NY, USA.
Brendan J KeatingDepartment of Surgery, New York University Grossman School of Medicine, New York, NY, USA.
Robert A MontgomeryNew York University Langone Transplant Institute, New York, NY, USA.
Ramin Sedaghat HeratiDepartment of Medicine, NYU Grossman School of Medicine, New York, New York, USA.

Funding

Project-005UL1TR001445 · NCATS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BREDELLA, MIRIAM ANTOINETTE, HOCHMAN, JUDITH S · 2015 to 2025
$103.5M
Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MARK Reid PHILIPS · 1985 to 2026
$83.1M
Virology CoreU19AI082630 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG · 2009 to 2026
$48.1M
Project 2U19AI191396 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Adam David Griesemer, ROBERT A MONTGOMERY · 2025 to 2026
$8.5M
A systems immunology approach for predicting poor responses to Hepatitis B vaccinationR01AI158617 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI HERATI, RAMIN · 2021 to 2025
$3.9M
NCATS NIH HHS UL1 TR001445NCI NIH HHS P30 CA016087NIAID NIH HHS R01 AI158617NIAID NIH HHS U19 AI082630NIAID NIH HHS U19 AI191396
6 · The paper itself

Abstract

Despite the life-saving successes of solid organ transplantation, the number of individuals needing organ transplant far exceeds the number of organs available for use each year. Porcine xenotransplantation, or the use of pig organs for transplantation in people, holds substantial promise but xenograft rejection in humans is poorly understood. T cell rejection by the host immune system is a major challenge for human allografts and may limit the longevity of porcine xenografts. To study the xenograft rejection, we evaluated T cell responses and repertoire dynamics across tissues following porcine thymokidney transplantation in a decedent model over 61 days after bilateral native kidney nephrectomy. Despite induction with anti-thymocyte globulin and ongoing immune suppression consisting of rituximab, corticosteroids, calcineurin inhibition, and mycophenolate mofetil, human T cell infiltration of the xenograft was observed and was associated with xenograft dysfunction. Longitudinal analysis of T cell clonotypes in biopsies of thymokidney revealed accumulation of clonal human CD4 and CD8 T cell responses. Moreover, circulating activated T cells, including circulating T follicular helper (cTfh), were xeno-reactive and increased in frequency around rejection events. We confirmed clonal dominance of a single CD8 clonotype - identified as donor-reactive in a mixed lymphocyte reaction - in the circulation leading up to the acute cellular rejection event. Following re-treatment with anti-thymocyte globulin and intensification of corticosteroids, the T cell clonotypes were dramatically diminished in frequency in thymokidney and lymph nodes, though not eliminated. Over time of observation, the T cell clonotypes were shared across multiple compartments, including xenograft, circulation and lymph nodes and formed clonal families with known xeno-reactive clonotypes, suggesting a coordinated immune response against a limited pool of antigenic targets. Together, these data demonstrate T cell repertoire dynamics across tissues in the setting of xenograft rejection and highlight opportunities for early surveillance, prediction and potential intervention.

Identifiers

PMID41279278
PMCPMC12637509

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.