Evidence map›Paper›PMID 41280040›Full record

ArticlebioRxiv : the preprint server for biology2025

Inverse stable isotope labeling (InverSIL) links predicted catecholate siderophore gene clusters to their products in diverse bacteria.

Jose Miguel D Robes, Tashi C E Liebergesell, Victoria P Medvedeva, Aaron W Puri

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Jose Miguel D RobesDepartment of Chemistry, University of Utah, Salt Lake City, Utah, USA.ORCID 0000-0002-5593-712X
Tashi C E LiebergesellDepartment of Chemistry, University of Utah, Salt Lake City, Utah, USA.ORCID 0009-0008-8714-2322
Victoria P MedvedevaDepartment of Chemistry, University of Utah, Salt Lake City, Utah, USA.ORCID 0009-0005-9201-9730
Aaron W PuriDepartment of Chemistry, University of Utah, Salt Lake City, Utah, USA.ORCID 0000-0002-6378-678X

Funding

Training Program in Microbial PathogenesisT32AI055434 · NIAID · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI MULVEY, MATTHEW A, PLANELLES, VICENTE · 2004 to 2025
$6.0M
Methylotrophs: underexplored bacteria for discovering novel natural products and biochemistryR35GM147018 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Aaron Webster Puri · 2022 to 2026
$1.9M
NIAID NIH HHS T32 AI055434NIGMS NIH HHS R35 GM147018
6 · The paper itself

Abstract

Bacteria produce high-affinity iron-chelating secondary metabolites called siderophores to access insoluble Fe(III) in their environments. Genome mining has revealed many predicted siderophore biosynthetic gene clusters (BGCs) in bacterial genomes, however the structures of their siderophore products remain mostly undetermined. This limits our molecular-level understanding of how bacteria acquire iron, as well as how they interact with other taxa that may use the same siderophores within bacterial communities. Here, we apply inverse stable isotope labeling (InverSIL) to rapidly connect predicted siderophore BGCs to their products. With InverSIL, bacteria are grown on

Identifiers

PMID41280040
PMCPMC12637720

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.