Evidence map›Paper›PMID 41281446›Full record

ArticleJHEP reports : innovation in hepatology2025

Blood and tissue dysregulated bile acids and short-chain fatty acids in cholangiocarcinoma.

Yaming Liu, Hind Hassan, Tayla R Brooks, Caitlin VanLith, Matthew Cooley, Mohamad Elgozair, Fowsiyo Y Ahmed, Nasra H Giama, Nellie A Campbell, Lianyong Su and 4 more

Abstract read
In one paragraph

Article in JHEP reports : innovation in hepatology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Bile acid signaling in health and disease.Molecular biomedicine · 2026
    Review
  2. Microbial dysbiosis in cholangiocarcinoma.Frontiers in microbiology · 2026
    Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Yaming LiuDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota 55902, USA.
Hind HassanDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota 55902, USA.
Tayla R BrooksDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota 55902, USA.
Caitlin VanLithDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota 55902, USA.
Matthew CooleyDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota 55902, USA.
Mohamad ElgozairDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota 55902, USA.
Fowsiyo Y AhmedDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota 55902, USA.
Nasra H GiamaDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota 55902, USA.
Nellie A CampbellDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota 55902, USA.
Lianyong SuDepartment of Microbiology and Immunology, Medical College of Virginia, Virginia Commonwealth University and Richmond VA Medical Center, Richmond, VA 23298, USA.
Yun-Ling TaiDepartment of Microbiology and Immunology, Medical College of Virginia, Virginia Commonwealth University and Richmond VA Medical Center, Richmond, VA 23298, USA.
Jianlin RenXiamen University Zhongshan Hospital, School of Medicine, Xiamen University, Xiamen, Fujian Province 361001, China.
Huiping ZhouDepartment of Microbiology and Immunology, Medical College of Virginia, Virginia Commonwealth University and Richmond VA Medical Center, Richmond, VA 23298, USA.
Lewis R RobertsDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota 55902, USA.

Funding

PILOT AND FEASIBILTY PROGRAMP30DK084567 · NIDDK · MAYO CLINIC ROCHESTER · PI Samar Ibrahim · 2009 to 2026
$22.2M
Circular RNAs in Cholestatic Liver DiseasesR01DK139587 · NIDDK · VIRGINIA COMMONWEALTH UNIVERSITY · PI HUIPING ZHOU · 2024 to 2026
$2.2M
Sphingolipids in alcoholic liver diseaseR01AA030180 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI PHILLIP B HYLEMON, HUIPING ZHOU · 2023 to 2026
$2.1M
BLRD VA IK6 BX004477BLRD VA IS1 BX004777NIAAA NIH HHS R01 AA030180NIDDK NIH HHS P30 DK084567NIDDK NIH HHS R01 DK139587
6 · The paper itself

Abstract

Background & Aims: Dysregulated bile acid (BA) homeostasis has been implicated in the initiation and progression of cholangiocarcinoma (CCA). The aim of this study was to investigate the roles of circulating and tumor BAs, oxysterols, short-chain fatty acids (SCFAs), transcriptomic changes, and stool microbiota composition in CCA, and their potential diagnostic and therapeutic implications. Methods: We used ultra-performance liquid chromatography-tandem mass spectrometry to quantify BAs, oxysterols, and SCFAs in serum from patients with benign focal nodular hyperplasia (n = 27), primary sclerosing cholangitis (PSC; n = 20), intrahepatic CCA (iCCA; n = 29), and extrahepatic CCA (eCCA; n = 35), and in tumor and adjacent non-tumor iCCA (n = 30) and eCCA (n = 26) tissues. Publicly available liver transcriptome and gut microbiome datasets were analyzed to assess BA metabolic pathway activity and related gene expression profiles. Results: Total primary conjugated BA levels and the taurine-to-glycine ratio of conjugated BAs were significantly elevated in the serum of patients with PSC and CCA compared to controls with focal nodular hyperplasia ( Conclusions: Profound alterations in serum and tissue levels of primary and taurine-conjugated BAs occur during cholangiocarcinogenesis. Further elucidation of the mechanisms regulating BA and oxysterol metabolism in CCA may offer new avenues for diagnosis and therapy. Impact and implications: Cholangiocarcinomas (CCAs) are aggressive malignancies with limited therapeutic options. Although CCA cells exhibit distinct metabolic profiles, investigating their regulation through the enterohepatic axis remains challenging. In this study, targeted metabolomics was used to analyze bile acid (BA) profiles in serum and liver tissue, serum short-chain fatty acids, and hepatic oxysterol levels in patients with intrahepatic and extrahepatic CCA, compared to controls with focal nodular hyperplasia and primary sclerosing cholangitis. Liver transcriptome analysis revealed differentially expressed genes involved in BA metabolism in patients with primary sclerosing cholangitis and CCA. Correlations were also examined between BAs, oxysterols, short-chain fatty acids, clinical features, and microbiome components implicated in CCA development. These findings provide new insights into BA dysregulation in CCA and establish a foundation for the development of novel diagnostic biomarkers and therapeutic strategies.

Indexed as

bile acidCholangiocarcinomagut microbiotaoxysterolshort chain fatty acid

Identifiers

PMID41281446
PMCPMC12637061

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.