Evidence map›Paper›PMID 41288510›Full record

ArticleBiochemistry2025

Engineering and Assay of Enzymes for Expanded Genetic Alphabet Replication.

Sanchita Bhadra, Sandy T Nguyen, Andrew D Ellington

Abstract read
In one paragraph

Article in Biochemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Sanchita BhadraDepartment of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas 78712, United States.ORCID 0000-0002-4956-2405
Sandy T NguyenDepartment of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas 78712, United States.
Andrew D EllingtonDepartment of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas 78712, United States.ORCID 0000-0001-6246-5338

Funding

Directed evolution of polymerases that can read and write extremely long sequencesR01EB027202 · NIBIB · UNIVERSITY OF TEXAS AT AUSTIN · PI ELLINGTON, ANDREW D · 2020 to 2024
$1.6M
NIBIB NIH HHS R01 EB027202
6 · The paper itself

Abstract

Use of noncanonical nucleotides for nucleic acid replication provides a critical way to understand how and why natural nucleotides were chosen by evolution and provides potential applications in biotechnology, diagnostics, therapeutics, and DNA computation. However, monitoring noncanonical nucleotide incorporation can be difficult, especially for high-throughput applications. Therefore, we have utilized a 6-letter genetic alphabet (G, A, T, C, Z, and P) for toehold-mediated DNA strand exchange assays. Toehold hybridization and branch migration were found to proceed readily through the formation of multiple consecutive non-natural base pairs between hydrogen bonding synthetic nucleotides dZ (6-amino-5-nitro-2(1

Indexed as

DNA ReplicationBase PairingBase Pair MismatchDNAEscherichia coliNucleotidesDNANucleotides

Identifiers

PMID41288510
PMCPMC13637703

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.