Evidence map›Paper›PMID 41301405›Full record

ArticleBiomolecules2025

Non-Vesicular Extracellular Particle (NVEP) Proteomes from Diverse Biological Sources Reveal Specific Marker Composition with Varying Enrichment Levels.

Wasifa Naushad, Bryson C Okeoma, Carlos Gartner, Yulica Santos-Ortega, Calvin P H Vary, Lakmini S Premadasa, Alessio Noghero, Jack T Stapleton, Ionita C Ghiran, Mahesh Mohan and 1 more

Abstract read
In one paragraph

Article in Biomolecules, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Wasifa NaushadDepartment of Pathology, Microbiology and Immunology Basic Sciences Building, New York Medical College, 15 Dana Road, Rms 327, 328, 328A, Valhalla, NY 10595-1524, USA.ORCID 0000-0002-2375-082X
Bryson C OkeomaDepartment of Pathology, Microbiology and Immunology Basic Sciences Building, New York Medical College, 15 Dana Road, Rms 327, 328, 328A, Valhalla, NY 10595-1524, USA.ORCID 0000-0002-6844-1035
Carlos GartnerMaineHealth Institute for Research, Center for Molecular Medicine, Scarborough, ME 04074, USA.
Yulica Santos-OrtegaMaineHealth Institute for Research, Center for Molecular Medicine, Scarborough, ME 04074, USA.
Calvin P H VaryMaineHealth Institute for Research, Center for Molecular Medicine, Scarborough, ME 04074, USA.
Lakmini S PremadasaSouthwest National Primate Research Center, Texas Biomedical Research Institute, San Antonio, TX 78227-5302, USA.
Alessio NogheroLovelace Biomedical Research Institute, Albuquerque, NM 87108-5127, USA.ORCID 0000-0002-8266-9247
Jack T StapletonDepartment of Internal Medicine, Carver College of Medicine, University of Iowa, 200 Hawkins Drive, Iowa City, IA 52242-1109, USA.ORCID 0000-0002-2302-9055
Ionita C GhiranDepartment of Anesthesia, Critical Care and Pain Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02115, USA.
Mahesh MohanSouthwest National Primate Research Center, Texas Biomedical Research Institute, San Antonio, TX 78227-5302, USA.ORCID 0000-0003-4360-3277
Chioma M OkeomaDepartment of Pathology, Microbiology and Immunology Basic Sciences Building, New York Medical College, 15 Dana Road, Rms 327, 328, 328A, Valhalla, NY 10595-1524, USA.ORCID 0000-0001-7737-6493

Funding

Understanding Factors Influencing COVID-19 Testing and Vaccination in Immigrant Low-income and Homeless Populations and Testing Targeted InterventionsU54GM115516 · NIGMS · MAINEHEALTH · PI Kimberly Luebbers · 2017 to 2026
$51.6M
Cannabinoid modulation of EV composition and function in HIV/SIV infectionR01DA050169 · NIDA · STATE UNIVERSITY NEW YORK STONY BROOK · PI MOHAN, MAHESH, OKEOMA, CHIOMA M · 2019 to 2023
$3.8M
The effect of HIV and cocaine abuse on semen exosome composition and functionR01DA042348 · NIDA · UNIVERSITY OF IOWA · PI OKEOMA, CHIOMA M · 2016 to 2020
$2.7M
Characterizing the physicochemical properties of membraneless condensates and its regulation by delta-9-tetrahydrocannabinol in HIV/SIV infection.R33DA053643 · NIDA · NEW YORK MEDICAL COLLEGE · PI Mahesh Mohan, Chioma M Okeoma · 2023 to 2026
$1.3M
Characterizing the physicochemical properties of membraneless condensates and its regulation by delta-9-tetrahydrocannabinol in HIV/SIV infection.R21DA053643 · NIDA · STATE UNIVERSITY NEW YORK STONY BROOK · PI MOHAN, MAHESH, OKEOMA, CHIOMA M · 2021 to 2022
$439k
ProteinSimple Jess System for Protein Analysis at NYMCS10OD036364 · OD · NEW YORK MEDICAL COLLEGE · PI OKEOMA, CHIOMA M · 2024 to 2024
$97k
NIDA NIH HHS R01 DA050169NIDA NIH HHS R21 DA053643NIDA NIH HHS R33 DA053643NIGMS NIH HHS U54 GM115516NIH HHS P20GM121301, U54GM115516, 1S10OD028508NIH HHS R01DA042348NIH HHS R01DA050169NIH HHS R21/R33DA053643NIH HHS S10 OD036364NIH HHS S10OD 036364Startup funds from NYMC and Lovelace Biomedical N/AVA Merit Review BX000207, VA SeqCURE
6 · The paper itself

Abstract

Extracellular particles (EPs), an umbrella term encompassing membrane-enclosed extracellular vesicles (EVs) and non-vesicular extracellular particles ([NVEPs], previously described as extracellular condensates [ECs]) contain a complex cargo of biomolecules, including DNA, RNA, proteins, and lipids, reflecting the physiological state of their cell of origin. Identifying proteins associated with EPs that regulate host responses to physiological and pathophysiological processes is of critical importance. Here, we report the findings of our study to gain insight into the proteins associated with NVEPs. We used samples from human semen, the rat brain, and the rhesus macaque (RM) brain and blood to assess the physical properties and proteome profiles of NVEPs from these specimens. The results show significant differences in the zeta potential, concentration, and size of NVEPs across different species. We identified 938, 51, and 509 total proteins from NVEPs isolated from rat brain tissues, RM blood, and human seminal plasma, respectively. The species-specific protein networks show distinct biological themes, while the species-conserved protein interactome was identified with six proteins (ALB, CST3, FIBA/FGA, GSTP1, PLMN/PLG, PPIA) associated with NVEPs in all samples. The six NVEP-associated proteins are prone to aggregation and formation of wide, insoluble, unbranched filaments with a cross-beta sheet quaternary structure, such as amyloid fibrils. Protein-to-function analysis indicates that the six identified proteins are linked to the release of dopamine, immune-mediated inflammatory disease, replication of RNA viruses, HIV-HCV co-infection, and inflammation. These interesting findings have created an opportunity to evaluate NVEPs for their potential use as biomarkers of health and disease. Additional in-depth studies are needed to clarify when and how these proteins sustain their physiological role or transition to pathogenic roles.

Indexed as

Extracellular VesiclesProteomeAnimalsBiomarkersBrainHumansMacaca mulattaMaleProteomicsRatsSemenBiomarkersProteomecapillary Western blotextracellular vesicles (EVs)markersnon-vesicular extracellular particles (NVEPs)proteomics

Identifiers

PMID41301405
PMCPMC12650339

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.