Evidence map›Paper›PMID 41316282›Full record

ReviewJournal of experimental & clinical cancer research : CR2025

Single-cell insights into tumor microenvironment heterogeneity and plasticity: transforming precision therapy in gastrointestinal cancers.

Jialei Weng, Feng Ju, Zicheng Lyu, Ningbo Fan, Daniel J Smit, Wenxin Xu, Xiaolin Wu, Philip Becker, Yinan Xu, Michal R Schweiger and 10 more

Abstract readReview
In one paragraph

Review in Journal of experimental & clinical cancer research : CR, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Jialei Weng *Department of General, Visceral, Thoracic and Transplantation Surgery, University Hospital of Cologne, Kerpener Straße 62, Cologne, 50937, Germany.
Feng Ju *Department of General, Visceral, Thoracic and Transplantation Surgery, University Hospital of Cologne, Kerpener Straße 62, Cologne, 50937, Germany.
Zicheng Lyu *Department of General, Visceral, Thoracic and Transplantation Surgery, University Hospital of Cologne, Kerpener Straße 62, Cologne, 50937, Germany.
Ningbo FanDepartment of General, Visceral, Thoracic and Transplantation Surgery, University Hospital of Cologne, Kerpener Straße 62, Cologne, 50937, Germany.
Daniel J SmitInstitute of Tumor Biology, University Medical Center Hamburg-Eppendorf, Hamburg, 20246, Germany.ORCID http://orcid.org/0000-0002-3190-9511
Wenxin XuDepartment of Liver Surgery and Transplantation, Liver Cancer Institute, Zhongshan Hospital, Fudan University, Key Laboratory of Carcinogenesis and Cancer Invasion, Ministry of Education, Shanghai, 200032, P. R. China.
Xiaolin WuDepartment of General, Visceral, Thoracic and Transplantation Surgery, University Hospital of Cologne, Kerpener Straße 62, Cologne, 50937, Germany.
Philip BeckerSingleron Biotechnologies GmbH, Cologne, 51105, Germany.
Yinan XuDepartment of General, Visceral, Thoracic and Transplantation Surgery, University Hospital of Cologne, Kerpener Straße 62, Cologne, 50937, Germany.
Michal R SchweigerInstitute for Translational Epigenetics, Faculty of Medicine, University Hospital Cologne, Cologne, 50931, Germany.
Axel M HillmerInstitute of Pathology, University of Cologne, Faculty of Medicine and University Hospital of Cologne, Cologne, 50937, Germany.
Ralf HarwigDep. Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, 14195, Germany.
Sheraz GulFraunhofer Institute for Translational Medicine and Pharmacology ITMP, Hamburg, 22525, Germany.
Alexander LinkDepartment of Gastroenterology, Friedrich-Alexander University Erlangen-Nuernberg , Medical Campus Upper Franconia, Bayreuth, 95445, Germany.
Lydia MederFaculty of Medicine, Chair of Experimental Medicine 1, Friedrich-Alexander University Erlangen-Nuernberg, Erlangen, 91054, Germany.
Nan FangSingleron Biotechnologies GmbH, Cologne, 51105, Germany.
Qiongzhu DongKey Laboratory of Whole-Period Monitoring and Precise Intervention of Digestive Cancer of Shanghai Municipal Health Commission, Shanghai, 201199, P. R. China.
Christiane J BrunsDepartment of General, Visceral, Thoracic and Transplantation Surgery, University Hospital of Cologne, Kerpener Straße 62, Cologne, 50937, Germany.
Ning RenKey Laboratory of Whole-Period Monitoring and Precise Intervention of Digestive Cancer of Shanghai Municipal Health Commission, Shanghai, 201199, P. R. China. renning@fudan.edu.cn.
Yue ZhaoDepartment of General, Visceral, Thoracic and Transplantation Surgery, University Hospital of Cologne, Kerpener Straße 62, Cologne, 50937, Germany. yue.zhao@uk-koeln.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The development and progression of gastrointestinal (GI) cancers not only depend on the malignancy of the tumor cells, but is also defined by the complex and adaptive nature of the tumor microenvironment (TME). The TME in GI cancers exhibits a complex internal structure, typically comprising cancer cells, cancer stem cells, cancer-associated fibroblasts, immune cells, and endothelial cells, all embedded within a dynamic extracellular matrix. This intricate ecosystem fuels tumor initiation, progression, metastasis, recurrence and therapy response through the heterogeneity and plasticity. Recent advances in single-cell sequencing have provided unprecedented resolution in profiling the cellular diversity and interactions within the TME. These technologies have uncovered previously unknown cell subtypes and intricate communication networks that drive therapy resistance and tumor relapse. In this review, we summarize and discuss the latest findings from single-cell sequencing of key cellular players and their interactions within the TME of GI cancers. We highlight single cell insights that are reshaping our understanding of tumor biology, with particular focus on their implications for overcoming therapy resistance and improving clinical outcomes. We believe that a deeper understanding of TME heterogeneity and plasticity at the single-cell level promises to transform the landscape of precision treatment in GI cancers.

Indexed as

Gastrointestinal NeoplasmsPrecision MedicineSingle-Cell AnalysisTumor MicroenvironmentAnimalsCell PlasticityHumansCancer-associated fibroblastsCell subsetsGastrointestinal cancersHeterogeneityPlasticitySingle-cell RNA sequencingTumor microenvironment

Identifiers

PMID41316282
PMCPMC12661778

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.