Evidence map›Paper›PMID 41323402›Full record

ArticleBiodiversity data journal2025

A long-term ecological research dataset from the marine genetic monitoring programme ARMS-MBON 2020-2021.

Justine Pagnier, Louise Allcock, Ibon Cancio, Eva Chatzinikolaou, Giorgos Chatzigeorgiou, Nathan Alexis Mitchell Chrismas, Federica Costantini, Thanos Dailianis, Klaas Deneudt, Oihane Díaz de Cerio and 24 more

Abstract read
In one paragraph

Article in Biodiversity data journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors.

Justine PagnierGothenburg Global Biodiversity Centre, Gothenburg, Sweden Gothenburg Global Biodiversity Centre Gothenburg Sweden.ORCID https://orcid.org/0000-0002-6531-1374
Louise AllcockUniversity of Galway, Galway, Ireland University of Galway Galway Ireland.ORCID https://orcid.org/0000-0002-4806-0040
Ibon CancioUniversity of the Basque Country (UPV/EHU), Leioa, Spain University of the Basque Country (UPV/EHU) Leioa Spain.
Eva ChatzinikolaouInstitute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR) Heraklion Greece.ORCID https://orcid.org/0000-0002-7171-5105
Giorgos ChatzigeorgiouInstitute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR) Heraklion Greece.ORCID https://orcid.org/0000-0003-3507-6542
Nathan Alexis Mitchell ChrismasRoyal Botanic Garden Edinburgh, Edinburgh, United Kingdom Royal Botanic Garden Edinburgh Edinburgh United Kingdom.
Federica CostantiniDepartment of Biological, Geological and Environmental Science, University of Bologna, Ravenna, Italy Department of Biological, Geological and Environmental Science, University of Bologna Ravenna Italy.ORCID https://orcid.org/0000-0002-8813-1923
Thanos DailianisInstitute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR) Heraklion Greece.ORCID https://orcid.org/0000-0002-4102-9331
Klaas DeneudtFlanders Marine Institute (VLIZ), Oostende, Belgium Flanders Marine Institute (VLIZ) Oostende Belgium.ORCID https://orcid.org/0000-0002-8559-3508
Oihane Díaz de CerioUniversity of the Basque Country (UPV/EHU), Leioa, Spain University of the Basque Country (UPV/EHU) Leioa Spain.ORCID https://orcid.org/0000-0002-5605-8434
Markos DigenisInstitute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR) Heraklion Greece.ORCID https://orcid.org/0000-0003-2360-2285
Katrina ExterFlanders Marine Institute (VLIZ), Oostende, Belgium Flanders Marine Institute (VLIZ) Oostende Belgium.ORCID https://orcid.org/0000-0002-5911-1536
Vasilis GerovasileiouDepartment of Environment, Faculty of Environment, Ionian University, Zakynthos, Greece Department of Environment, Faculty of Environment, Ionian University Zakynthos Greece.ORCID https://orcid.org/0000-0002-9143-7480
Jose González FernándezCentro de Investigación Mariña, Universidade de Vigo, Vigo, Spain Centro de Investigación Mariña, Universidade de Vigo Vigo Spain.ORCID https://orcid.org/0000-0003-1576-9819
Laura KauppiTvärminne Zoological Station, University of Helsinki, Hanko, Finland Tvärminne Zoological Station, University of Helsinki Hanko Finland.ORCID https://orcid.org/0000-0002-3620-8095
Kleoniki KeklikoglouInstitute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR) Heraklion Greece.ORCID https://orcid.org/0000-0002-6693-2033
Jon Bent KristoffersenInstitute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR) Heraklion Greece.ORCID https://orcid.org/0000-0002-8804-1864
Rune LagaisseFlanders Marine Institute (VLIZ), Oostende, Belgium Flanders Marine Institute (VLIZ) Oostende Belgium.ORCID https://orcid.org/0000-0001-9191-9140
Borut MavričNational Institute of Biology, Marine Biology Station Piran, Piran, Slovenia National Institute of Biology, Marine Biology Station Piran Piran Slovenia.
Jonas MortelmansFlanders Marine Institute (VLIZ), Oostende, Belgium Flanders Marine Institute (VLIZ) Oostende Belgium.ORCID https://orcid.org/0000-0002-8781-7915
Estefania ParedesCentro de Investigación Mariña, Universidade de Vigo, Vigo, Spain Centro de Investigación Mariña, Universidade de Vigo Vigo Spain.ORCID https://orcid.org/0000-0001-8829-360X
Christina PavloudiEuropean Marine Biological Resource Centre (EMBRC), Paris, France European Marine Biological Resource Centre (EMBRC) Paris France.ORCID https://orcid.org/0000-0001-5106-6067
Alessandro PiazzaDepartment of Biological, Geological and Environmental Science, University of Bologna, Ravenna, Italy Department of Biological, Geological and Environmental Science, University of Bologna Ravenna Italy.ORCID https://orcid.org/0009-0003-4829-7931
Anne Marie PowerUniversity of Galway, Galway, Ireland University of Galway Galway Ireland.ORCID https://orcid.org/0000-0001-7351-2451
Andreja RamšakNational Institute of Biology, Marine Biology Station Piran, Piran, Slovenia National Institute of Biology, Marine Biology Station Piran Piran Slovenia.ORCID https://orcid.org/0000-0003-1961-5120
Ioulia SantiEuropean Marine Biological Resource Centre (EMBRC), Paris, France European Marine Biological Resource Centre (EMBRC) Paris France.ORCID https://orcid.org/0000-0002-0202-8256
Jostein SolbakkenTvärminne Zoological Station, University of Helsinki, Hanko, Finland Tvärminne Zoological Station, University of Helsinki Hanko Finland.
Melanthia StavroulakiInstitute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR) Heraklion Greece.ORCID https://orcid.org/0000-0003-4392-7159
Peter Anton Upadhyay StæhrDepartment of Ecoscience, Marine Diversity and Experimental Ecology, Aarhus university, Aarhus, Denmark Department of Ecoscience, Marine Diversity and Experimental Ecology, Aarhus university Aarhus Denmark.
Javier TajaduraPlentzia Marine Station (PiE-UPV/EHU), Plentzia, Spain Plentzia Marine Station (PiE-UPV/EHU) Plentzia Spain.
Jesus Souza TroncosoCentro de Investigación Mariña, Universidade de Vigo, Vigo, Spain Centro de Investigación Mariña, Universidade de Vigo Vigo Spain.
Katerina VasileiadouInstitute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR) Heraklion Greece.ORCID https://orcid.org/0000-0002-5057-6417
Emmanouela VernadouInstitute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR) Heraklion Greece.
Matthias ObstUniversity of Gothenburg, Gothenburg, Sweden University of Gothenburg Gothenburg Sweden.ORCID https://orcid.org/0000-0003-0264-9631

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Continuing the international efforts of the ARMS Marine Biodiversity Observation Network (ARMS-MBON), we present data from the second sampling campaign, coming from 56 Autonomous Reef Monitoring Structures (ARMS) deployed in 2020 and 2021 along European coasts under the European Marine Omics Biodiversity Observation Network (EMO BON). The dataset includes information on sampling locations and conditions, sample archiving and quality reports of collected samples. Data and metadata are openly accessible and can be downloaded from the associated GitHub repository. Sequence data can be accessed via the European Nucleotide Archive (ENA) through the corresponding accession numbers. Images of ARMS plates are stored on PlutoF and can be downloaded through links provided in this paper. Sequence data were processed and explored with the PEMA pipeline, resulting in 17,194, 7,235 and 5,261 unique ASVs/OTUs for COI, 18S and ITS, respectively. In this dataset, ARMS revealed the presence of over 61 eukaryotic phyla, aligning with our previous sampling campaign. Amongst these phyla, 35 had sequences identified to the species level. With this dataset and its associated paper, we provide a standardised resource for marine biodiversity monitoring and scientific analyses of benthic biodiversity. The presented data product supports future studies on the status and changes in species composition, distribution and genetic diversity.

Identifiers

PMID41323402
PMCPMC12663723

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.