Evidence map›Paper›PMID 41327460›Full record

ArticleBMC research notes2025

Isolation and expression of terminal flower1 (TFL1) gene in clove (Syzygium aromaticum L.).

Ireng Darwati, Tri Joko Santoso, Agus Rachmat, Agus Sutanto, Nurliani Bermawie, Atmitri Sisharmini, Rudi Suryadi, Devi Rusmin, Octivia Trisilawati, R Vitri Garvita and 3 more

Abstract read
In one paragraph

Article in BMC research notes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Ireng DarwatiResearch Center for Estate Crops, National Research and Innovation Agency, Cibinong, 16911, Indonesia.
Tri Joko SantosoResearch Center for Horticulture, National Research and Innovation Agency, Cibinong, 16911, Indonesia.
Agus RachmatResearch Center for Genetic Engineering, National Research and Innovation Agency, Cibinong, 16911, Indonesia.
Agus SutantoResearch Center for Horticulture, National Research and Innovation Agency, Cibinong, 16911, Indonesia. agus191@brin.go.id.
Nurliani BermawieResearch Center for Estate Crops, National Research and Innovation Agency, Cibinong, 16911, Indonesia.
Atmitri SisharminiResearch Center for Food Crops, National Research and Innovation Agency, Cibinong, 16911, Indonesia.
Rudi SuryadiResearch Center for Estate Crops, National Research and Innovation Agency, Cibinong, 16911, Indonesia.
Devi RusminResearch Center for Estate Crops, National Research and Innovation Agency, Cibinong, 16911, Indonesia.
Octivia TrisilawatiResearch Center for Estate Crops, National Research and Innovation Agency, Cibinong, 16911, Indonesia.
R Vitri GarvitaResearch Center for Applied Botany, National Research and Innovation Agency, Cibinong, 16911, Indonesia.
Muchamad YusronResearch Center for Estate Crops, National Research and Innovation Agency, Cibinong, 16911, Indonesia.
Suryani SuryaniDirectorate of Laboratory Management, Research Facilities, and Science Technology Areas, National Research and Innovation Agency, Cibinong, 16911, Indonesia.
Tika AnggraeniDirectorate of Laboratory Management, Research Facilities, and Science Technology Areas, National Research and Innovation Agency, Cibinong, 16911, Indonesia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveSyzygium aromaticum L. is a tropical tree valued for aromatic buds that occur at the branch tips directly affecting yield. The molecular mechanisms of flowering regulation in clove, especially as the role of the TERMINAL FLOWER 1 (TFL1) gene, are poorly understood. Most research has emphasized morphology and environmental factors cues, leaving a significant gap in knowledge for improving productivity through breeding. This study aimed to isolate and characterize the S. aromaticum TFL1 (SaTFL1) gene and analyze its expression across different developmental stages. DNA and RNA were extracted from first young leaves of both vegetative (VG) and generative (GG) phase plants, successfully amplifying and sequencing the gene. Gene expression using Reverse Transcriptase PCR on cDNAs derived from both tissue types through comprehensive analysis, including BLAST and phylogenetic studies.

resultsOur results revealed that the deduced amino acid sequence of the partial SaTFL1 has high identity (86.70% to 98.11%) and similarity (96.22% to 100%) with TFL1/CEN2 proteins from 15 other plant species. SaTFL1 expression was only found in vegetative tissues but not in generative tissues. The absence of SaTFL1 expression in generative tissues suggests its key role in promoting vegetative growth and regulating phase transitions. This study is the first to isolate and analyze TFL1 expression in clove, highlighting its potential function in flowering regulation and improving clove productivity.

Indexed as

FlowersGene Expression Regulation, PlantGenes, PlantPlant ProteinsSyzygiumAmino Acid SequencePhylogenyPlant LeavesPlant ProteinsCloveFloweringGene expressionPhase transition

Identifiers

PMID41327460
PMCPMC12776960

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.