Evidence map›Paper›PMID 41330977›Full record

ArticleScientific reports2025

SynaptopathyDB integrates synaptic proteomes, genetic and phenotypic data to advance research on nervous system disorders.

Oksana Sorokina, Digin Dominic, Àlex Bayés, J Douglas Armstrong, Seth G N Grant

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Oksana Sorokina *Institute for Adaptive and Neural Computation, School of Informatics, University of Edinburgh, Edinburgh, EH8 9AB, UK.
Digin Dominic *Genes to Cognition Programme, Institute of Neuroscience and Cardiovascular Research, University of Edinburgh, Edinburgh, EH16 4SB, UK.
Àlex BayésMolecular Physiology of the Synapse Laboratory, Institut de Recerca Sant Pau (IR SANT PAU), Barcelona, Spain.
J Douglas ArmstrongInstitute for Adaptive and Neural Computation, School of Informatics, University of Edinburgh, Edinburgh, EH8 9AB, UK.
Seth G N GrantGenes to Cognition Programme, Institute of Neuroscience and Cardiovascular Research, University of Edinburgh, Edinburgh, EH16 4SB, UK. seth.grant@ed.ac.uk.

Funding

BBSRC BB/X009343/1Biotechnology and Biological Sciences Research Council BB/X009343/1Wellcome TrustWellcome Trust 218293/Z/19/Z
6 · The paper itself

Abstract

Synaptic dysfunction resulting from pathogenic variants in genes encoding synaptic proteins is a major contributor to brain and behavioural disorders, collectively termed synaptopathies. To facilitate research into the genetic basis and clinical manifestations of synaptopathy we have created SynaptopathyDB, an online resource that integrates data from 64 mammalian synapse proteomic studies and multiple genetic and phenotypic resources ( www.synaptopathyDB.org ). We identified a consensus set of 3,437 mammalian synapse proteins from presynaptic and postsynaptic compartments, which have wide application in genetic and omic studies. Mutations in 954 genes encoding 28% of the consensus synapse proteome were associated with 1,266 OMIM diseases of the central and peripheral nervous system. We present findings that underscore the pervasive role of synaptic gene variants in the phenotypes of neurological, psychiatric, developmental, and systemic disorders highlighting the significant burden they impose on individuals and healthcare systems. SynaptopathyDB is a versatile platform and discovery tool for understanding the role of synapse proteins and genetic variants in human disease phenotypes.

Indexed as

Nervous System DiseasesProteomeSynapsesAnimalsHumansMutationPhenotypeProteomicsProteome

Identifiers

PMID41330977
PMCPMC12673098

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.