Evidence map›Paper›PMID 41332270›Full record

ArticleClinical and translational science2025

Application of Machine Learning to Discriminate Photoreceptor Cell Species in Xenotransplanted Chimeric Retinas.

Kang V Li, Annabelle Pan, Ying V Liu, Bani Antonio-Aguirre, Joyce Wang, McKaily Adams, Christina McNerney, Sai Bo Bo Tun, Kenneth Jimenez, Yuchen Lu and 5 more

Abstract read
In one paragraph

Article in Clinical and translational science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Kang V LiWilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0003-0355-4255
Annabelle PanWilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0003-2079-4576
Ying V LiuWilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0002-4568-7585
Bani Antonio-AguirreWilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0003-2393-1097
Joyce WangWilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID 0009-0007-0613-667X
McKaily AdamsDepartment of Biology, Krieger School of Arts and Sciences, Johns Hopkins University, Baltimore, Maryland, USA.ORCID 0009-0004-6581-6104
Christina McNerneyDepartment of Biology, Krieger School of Arts and Sciences, Johns Hopkins University, Baltimore, Maryland, USA.ORCID 0000-0003-2265-6329
Sai Bo Bo TunSingapore Eye Research Institute, Singapore National Eye Center, Singapore, Singapore.ORCID 0000-0002-2013-8379
Kenneth JimenezWilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Yuchen LuWilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID 0009-0001-9058-7313
Zhuolin LiWilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID 0009-0008-3370-633X
Minda McNallyWilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0003-3126-1329
Veluchamy A BarathiSingapore Eye Research Institute, Singapore National Eye Center, Singapore, Singapore.ORCID 0000-0002-6477-9784
Robert J JohnstonDepartment of Biology, Krieger School of Arts and Sciences, Johns Hopkins University, Baltimore, Maryland, USA.ORCID 0000-0002-5775-6218
Mandeep S SinghWilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0003-1749-0088

Funding

Cone subtype specification in human retinas and organoidsR01EY030872 · NEI · JOHNS HOPKINS UNIVERSITY · PI JOHNSTON, ROBERT JOHN · 2020 to 2023
$2.1M
Developing photoreceptor repair for macular degeneration therapy.R01EY033103 · NEI · JOHNS HOPKINS UNIVERSITY · PI SINGH, MANDEEP · 2021 to 2025
$2.0M
Spatiotemporal regulation of thyroid hormone signaling in cone subtype specification in human retinal organoidsF31EY033187 · NEI · JOHNS HOPKINS UNIVERSITY · PI MCNERNEY, CHRISTINA LYNNE · 2021 to 2023
$140k
BrightFocus Foundation G2019300Foundation Fighting BlindnessJohns Hopkins University EY001765Joseph Albert Hekimian FundJuliette RP Vision FoundationKnights Templar Eye Foundation 147042Maryland Technology Development CorporationNEI NIH HHS F31EY033187NEI NIH HHS R01 EY030872NEI NIH HHS R01EY030872NEI NIH HHS R01EY033103Shulsky FoundationWilmer Pooled Professor Fund (PPF) Lutty Grant
6 · The paper itself

Abstract

Photoreceptor transplantation is being studied to restore visual function in retinal diseases causing blindness, including age-related macular degeneration, hereditary eye diseases, and traumatic retinopathy. Preclinical studies often involve delivering exogenous human photoreceptor cells into animal models' retinas. A key readout in such experiments is distinguishing donor cell integration from artificial labeling secondary to material transfer of cytosolic or nuclear labels. Recognizing donor (human) versus animal photoreceptor nuclei is key, but purely immunohistology discrimination is challenging due to antigenic species overlap or intercellular antigen transfer. To address this, we sought to develop and validate a computational technique to discriminate between photoreceptor cells of different animal species based on machine learning of nuclear morphology. We aim to evaluate the feasibility of computer-assisted nuclear detection combined with random forest classification to automate species differentiation in DAPI-stained photoreceptors after xenotransplantation into mouse and pig retinas. Our models were trained on single-species samples and validated with mixed-species samples. We then transplanted human embryonic stem cell-derived retinal organoid cells into rodent and pig retinal degeneration models. The random forest model accurately determined cell identity post-xenotransplantation, validated by histological assessment using an antihuman nuclear antibody. Our results support the potential efficacy of employing machine learning image analysis and classification techniques that may promote experimental rigor, minimize observer bias, and enable high throughput semiautomated workflows for transplantation outcomes analysis. The methodological framework reported here may enable a more nuanced and precise analysis of the behavior of transplanted photoreceptors for the purposes of human retinal regeneration.

Indexed as

Machine LearningPhotoreceptor Cells, VertebrateRetinaRetinal DegenerationTransplantation, HeterologousAnimalsDisease Models, AnimalHeterograftsHuman Embryonic Stem CellsHumansMiceOrganoidsSpecies SpecificitySwinecell migrationcellular component transferretinal organoidsretinitis pigmentosaStargardt diseasestem cell transplantation

Identifiers

PMID41332270
PMCPMC12673224

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.