Evidence map›Paper›PMID 41332618›Full record

ArticlebioRxiv : the preprint server for biology2025

The Rayleigh Quotient and Contrastive Principal Component Analysis I.

Maria Carilli, Kayla Jackson, Lior Pachter

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Maria CarilliDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0002-8977-7224
Kayla JacksonDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0001-6483-0108
Lior PachterDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0002-9164-6231

Funding

A spatial view of hematopoietic regeneration dynamics in the bone marrowR01DK143671 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MICHAEL B ELOWITZ, Rong Lu · 2024 to 2026
$8.1M
NIDDK NIH HHS R01 DK143671
6 · The paper itself

Abstract

Contrastive learning methods can be powerful tools for genomics, enabling the identification of signals in an experiment via dimension reduction while reducing noise using a control. One such popular approach is contrastive PCA, which, despite being used in a variety of settings, does not scale to large datasets. We show that the contrastive PCA objective is an approximation of a Rayleigh quotient, analogous in form to Fisher's linear discriminant analysis and the common spatial patterns method. The Rayleigh quotient is

Identifiers

PMID41332618
PMCPMC12667745

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.