Evidence map›Paper›PMID 41332765›Full record

ArticlebioRxiv : the preprint server for biology2025

H pilin cyclisation and pilus biogenesis are promiscuous but electrostatic perturbations impair conjugation efficiency.

Shan He, Naito Ishimoto, Joshua L C Wong, Sophia David, Julia Sanchez-Garrido, Mikhail Bogdanov, Konstantinos Beis, Gad Frankel

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Shan HeDepartment of Life Sciences, Imperial College London, SW7 2AZ, UK.
Naito IshimotoDepartment of Life Sciences, Imperial College London, SW7 2AZ, UK.
Joshua L C WongDepartment of Life Sciences, Imperial College London, SW7 2AZ, UK.
Sophia DavidCentre for Genomic Pathogen Surveillance, Pandemic Sciences Institute, University of Oxford, Oxford, OX3 7LF, UK.
Julia Sanchez-GarridoDepartment of Life Sciences, Imperial College London, SW7 2AZ, UK.ORCID 0000-0002-5847-4167
Mikhail BogdanovDepartment of Biochemistry & Molecular Biology, The University of Texas Health Science Center, McGovern Medical School, Houston, TX 77030, USA.
Konstantinos BeisDepartment of Life Sciences, Imperial College London, SW7 2AZ, UK.
Gad FrankelDepartment of Life Sciences, Imperial College London, SW7 2AZ, UK.

Funding

Protein sequence determinants and properties of the lipid bilayer that govern membrane protein dynamic organizationR01GM121493 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BOGDANOV, MIKHAIL V., DOWHAN, WILLIAM · 2017 to 2025
$3.6M
Gates Foundation INV-025280NIGMS NIH HHS R01 GM121493Wellcome Trust
6 · The paper itself

Abstract

During conjugation, plasmid DNA is transferred from donor to recipient bacteria via the plasmid-encoded mating pilus, formed as thin helical assemblies of polymerised pilin subunits. In the IncHI1 R27 plasmid-encoded pilus, the TrhA pilin undergoes cyclisation (via a peptide bond between Gly1 and Asp69), essential for conjugation. Gly1 and Asp69 are exposed on the pilus surface and conserved in all TrhA pilins in the Plascad database. Substituting Asp69 with Asn, Ala, Gly, or Arg did not prevent cyclisation or pilus formation, which remained structurally indistinguishable from the wild type. Conjugation efficiency of the Asp69 substitutions across multiple recipient species correlated with side chain size, in the order Asp69Asn > Asp69Ala > Asp69Gly. However, Asp69Arg, as well as Asp69Lys and Gly1Lys substitutions abolished conjugation, likely due to the positively charged pilus surface (opposite to the wild-type negative charge) forming unfavourable electrostatic interactions with the recipient outer membrane's inner leaflet, composed solely of zwitterionic phosphatidylethanolamine (PE). Consistently, conjugation was rescued in recipients lacking PE. These findings indicate strong selective pressure to maintain Gly1 and Asp69, as efficient DNA transfer depends on precise electrostatic and steric constraints of the pilus surface.

Identifiers

PMID41332765
PMCPMC12667790

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.