Evidence map›Paper›PMID 41345831›Full record

ArticleBMC genomics2025

Comparative study on the rumen microbial communities and functions between Wagyu and Holstein calves.

Ye Bu, Fang Sun, Li Liu, Xinmiao He, Haoran Wang, Zhaohui Chen, Tengfei He, Shanshan Xu, Xiaochuan Zhao, Xiangren Meng

Abstract readComparative Study
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ye BuInstitute of Animal Husbandry of Heilongjiang Academy of Agricultural Sciences, Harbin, 150086, China.
Fang SunInstitute of Animal Husbandry of Heilongjiang Academy of Agricultural Sciences, Harbin, 150086, China. hljxmsf@163.com.
Li LiuInstitute of Animal Husbandry of Heilongjiang Academy of Agricultural Sciences, Harbin, 150086, China.
Xinmiao HeInstitute of Animal Husbandry of Heilongjiang Academy of Agricultural Sciences, Harbin, 150086, China.
Haoran WangCollege of Animal Science and Technology, Northeast Agricultural University, Harbin, 150030, China.
Zhaohui ChenCollege of Animal Science and Technology, China Agricultural University, Beijing, 100083, China.
Tengfei HeCollege of Animal Science and Technology, China Agricultural University, Beijing, 100083, China.
Shanshan XuInstitute of Animal Husbandry of Heilongjiang Academy of Agricultural Sciences, Harbin, 150086, China.
Xiaochuan ZhaoInstitute of Animal Husbandry of Heilongjiang Academy of Agricultural Sciences, Harbin, 150086, China.
Xiangren MengInstitute of Animal Husbandry of Heilongjiang Academy of Agricultural Sciences, Harbin, 150086, China.

Funding

Heilongjiang Agricultural Science and Technology Innovation Leapfrog Project CX23YQ31Supported by China Agriculture Research System of MOF and MARA CARS-37
6 · The paper itself

Abstract

backgroundUnderstanding the rumen microbiota's development in calves is essential for optimizing breed-specific feeding strategies. This study aimed to comparatively investigate the dynamic changes in the rumen microbial community structure and function in Wagyu and Holstein calves.

methodsFive 3-month-old Wagyu calves and five age-matched Holstein calves were selected. All animals received the same diet consisting of concentrate and hay, with free access to feed and water. Rumen fluid samples were collected monthly from 3 to 6 months of age. Metagenomic sequencing was performed to assess microbial composition (phylum and genus levels), alpha diversity (Shannon, Simpson, ACE, and Chao1 indices), and functional pathway (KEGG-based).

resultsThe cumulative relative abundance of dominant taxa at both phylum and genus levels declined with age in both breeds, more markedly in Wagyu calves than in Holsteins. From 3 to 6 months of age, the top five phyla combined dropped by 3.25% in Wagyu and 0.87% in Holstein calves, whereas the top ten genera combined decreased by 1.63% and 0.63%, respectively. Alpha diversity in Wagyu calves increased significantly with age. At 5 and 6 months, the Shannon, ACE, and Chao1 indices were significantly higher than those at 3 months (P < 0.05). Moreover, from 4 to 6 months, Wagyu calves consistently exhibited significantly higher diversity indices than Holsteins (P < 0.05). At 6 months, Wagyu calves showed a significant reduction in metabolism-related microbial genes and an increase in genes related to cellular processes and genetic information processing compared to earlier ages and Holstein calves (P < 0.05).

conclusionsThese findings suggest potential breed-specific differences in the succession and functional maturation of rumen microbiota. Holstein calves developed earlier and more stable metabolic functions, while Wagyu calves underwent a more dynamic microbial selection process. CLINICAL TRIAL NUMBER: Not applicable.

Indexed as

Gastrointestinal MicrobiomeMicrobiotaRumenAnimalsBacteriaCattleMetagenomeMetagenomicsCalvesHolsteinMetagenomicsRumen microbiotaWagyu

Identifiers

PMID41345831
PMCPMC12781348

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.