Evidence map›Paper›PMID 41354698›Full record

ArticleScientific reports2025

Identification and clinical validation of endoplasmic reticulum genes related to pulmonary tuberculosis.

Min Li, Yuxiu Wang, Meiying Wu, Ling-Feng Min

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Min LiDepartment of Tuberculosis, Suzhou Fifth People's Hospital (Affiliated Infectious Disease Hospital of Soochow University), Suzhou, China.
Yuxiu WangDepartment of Respiratory and Critical Care Medicine, Northern Jiangsu People's Hospital (Affiliated to Clinical Medical College of Yangzhou University), No. 98 Nantong West Road, Yangzhou, 225000, Jiangsu, People's Republic of China.
Meiying WuDepartment of Tuberculosis, Suzhou Fifth People's Hospital (Affiliated Infectious Disease Hospital of Soochow University), Suzhou, China.
Ling-Feng MinDepartment of Respiratory and Critical Care Medicine, Northern Jiangsu People's Hospital (Affiliated to Clinical Medical College of Yangzhou University), No. 98 Nantong West Road, Yangzhou, 225000, Jiangsu, People's Republic of China. minlingfeng@126.com.

Funding

Suzhou Health Commission, Jiangsu Province Szlcyxzx202108
6 · The paper itself

Abstract

Tuberculosis (TB), caused by Mycobacterium tuberculosis (MTB), is a serious infectious disease. Previous studies have shown that endoplasmic reticulum (ER) stress plays an important role in various infectious processes. This study aimed to identify potential ER stress-related genes in TB by analyzing differentially expressed genes (DEGs) and to explore the role of ER stress in MTB infection. Ten ER stress-related DEGs (ERSRDEGs) were identified by standardizing and analyzing differential expression in the dataset GSE114911. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses revealed that these ERSRDEGs are significantly involved in neutrophil migration and the IL-17 signaling pathway. A protein-protein interaction network identified four hub genes (IL-1B, CCL20, IL -1 A, and TNF), among which gene IL-1B showed highly significant differential expression in the independent dataset GSE147964, demonstrating excellent diagnostic performance (AUC = 0.93). This finding was further validated by Enzyme-linked immunosorbent assay (ELISA), which confirmed high expression of IL-1B in the plasma of TB patients. Immune infiltration analysis showed increased infiltration of M1 macrophages in the TB infection group, with gene IL-1B strongly positively correlated with M1 macrophage abundance. Additionally, the study analyzed correlations between genes IL-1 A and IL-1B and clinical indicators, including inflammatory factors and D-dimer levels. The results indicated that gene IL-1B was positively correlated with IL-6, TNF-α, and IFN-γ, while gene IL-1 A was positively correlated with D-dimer. Overall, these findings emphasize the critical role of ER stress-related genes in the pathophysiology of MTB infection.

Indexed as

Endoplasmic ReticulumEndoplasmic Reticulum StressTuberculosis, PulmonaryGene Expression ProfilingGene OntologyGene Regulatory NetworksHumansInterleukin-1betaMycobacterium tuberculosisProtein Interaction MapsInterleukin-1betaBioinformatics analysisEndoplasmic reticulum stressPulmonary tuberculosis

Identifiers

PMID41354698
PMCPMC12769499

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.