Evidence map›Paper›PMID 41356691›Full record

ArticleVirus evolution2025

Detection and variant characterization of lumpy skin disease virus from dairy cattle in India.

Manali Bajpai, Ajinkya Khilari, Bhagyashree Likhitkar, Pankaj Musale, Santoshkumar Jadhav, Velu Dhanikachalam, Payal Kakramkar, Kaustubh Bhave, Marimuthu Swaminathan, Sachin Joshi and 1 more

Abstract read
In one paragraph

Article in Virus evolution, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Manali BajpaiBiochemical Sciences Division, CSIR- National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, Maharashtra 411008, India.
Ajinkya KhilariBiochemical Sciences Division, CSIR- National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, Maharashtra 411008, India.
Bhagyashree LikhitkarBiochemical Sciences Division, CSIR- National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, Maharashtra 411008, India.
Pankaj MusaleBiochemical Sciences Division, CSIR- National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, Maharashtra 411008, India.
Santoshkumar JadhavBAIF Development Research Foundation, BAIF Road, Uruli Kanchan, Pune, Maharashtra 412202, India.
Velu DhanikachalamBAIF Development Research Foundation, BAIF Road, Uruli Kanchan, Pune, Maharashtra 412202, India.
Payal KakramkarBAIF Development Research Foundation, BAIF Road, Uruli Kanchan, Pune, Maharashtra 412202, India.
Kaustubh BhaveBAIF Development Research Foundation, BAIF Road, Uruli Kanchan, Pune, Maharashtra 412202, India.
Marimuthu SwaminathanFreelance Consultant, Central Research Station, BAIF Development Research Foundation, BAIF Road, Uruli Kanchan, Pune - 412202, India.
Sachin JoshiBAIF Development Research Foundation, BAIF Road, Uruli Kanchan, Pune, Maharashtra 412202, India.
Dhanasekaran ShanmugamBiochemical Sciences Division, CSIR- National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, Maharashtra 411008, India.ORCID https://orcid.org/0000-0002-3341-4846

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The spread of a severe and often fatal form of lumpy skin disease (LSD) in cattle and water buffaloes has caused widespread mortality and morbidity of these animals in India. To track and understand the genetic changes occurring in the virus and to enable routine surveillance of the virus, multiplexed polymerase chain reaction (PCR) and sequencing methods were developed and validated in this study. Multiplexed nested PCR for LSD virus (LSDV) detection was optimized using skin lesion swabs and nasal samples collected from symptomatic and asymptomatic animals. For genotyping, overlapping PCRs to amplify the entire LSDV genome were developed and tested on field samples collected from the Maharashtra and Odisha states of India. Analysis of LSDV genomes from 41 field samples collected in 2022 and 2023 revealed the presence of highly conserved novel mutations. Phylogenetic analysis shows that a distinct genotype of LSDV has spread across India, which warrants genomic surveillance of the virus in the coming years to track the evolution and transmission of the virus. The non-invasive sample collection, detection, and genotyping methods described in this study can facilitate large-scale surveillance of LSDV in dairy animals.

Indexed as

genotyping by sequencinglumpy skin diseasemultiplexed nested PCROxford Nanopore technologyvirus surveillance

Identifiers

PMID41356691
PMCPMC12678169

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.