Evidence map›Paper›PMID 41359676›Full record

ArticlePLoS computational biology2025

Observing hidden neuronal states in experiments.

Dmitry Amakhin, Anton Chizhov, Guillaume Girier, Mathieu Desroches, Jan Sieber, Serafim Rodrigues

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dmitry AmakhinLaboratory of Molecular Mechanisms of Neural Interactions, Sechenov Institute of Evolutionary Physiology and Biochemistry of RAS, Saint Petersburg, Russia.ORCID 0000-0002-7098-4768
Anton ChizhovInstitute for Theoretical Physics, University of Bremen, Bremen, Germany.
Guillaume GirierMCEN Team, Basque Center for Applied Mathematics, Bilbao, Spain.
Mathieu DesrochesMathNeuro Team, Inria Branch of the University of Montpellier, Montpellier, France.
Jan SieberCollege of Engineering, Mathematics and Physical Sciences, University of Exeter, Exeter, United Kingdom.
Serafim RodriguesMCEN Team, Basque Center for Applied Mathematics, Bilbao, Spain.ORCID 0000-0002-3601-5760

Funding

European Union NextGenerationEU/PRTRIkerbasque Foundation and the Basque GovernmentMinistry of Science and Innovation: BCAM Severo Ochoa accreditation
6 · The paper itself

Abstract

In this article we demonstrate a general protocol for constructing systematically experimental steady-state bifurcation diagrams for electrophysiologically active cells. We perform our experiments on entorhinal cortex neurons, both excitatory (pyramidal neurons) and inhibitiory (interneurons). A slowly ramped voltage-clamp electrophysiology protocol serves as closed-loop feedback controlled experiment for the subsequent current-clamp open-loop protocol on the same cell. In this way, the voltage-clamped experiment determines dynamically stable and unstable (hidden) steady states of the current-clamp experiment. The transitions between observable steady states and observable spiking states in the current-clamp experiment provide partial evidence for stability and bifurcations of the steady states. This technique for completing steady-state bifurcation diagrams in a model-independent way expands support for model validation to otherwise inaccessible regions of the phase space. Overlaying the voltage-clamp and current-clamp protocols leads to an experimental validation of the classical slow-fast dissection method introduced by J. Rinzel in the 1980s and routinely applied ever since in order to analyse slow-fast neuronal models. Our approach opens doors to observing further complex hidden states with more advanced control strategies, allowing to control real cells beyond pharmacological manipulations.

Indexed as

Models, NeurologicalNeuronsAction PotentialsAnimalsComputational BiologyComputer SimulationEntorhinal CortexInterneuronsPatch-Clamp TechniquesPyramidal CellsRats

Identifiers

PMID41359676
PMCPMC12714291

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.