Evidence map›Paper›PMID 41361719›Full record

ArticleWorld journal of urology2025

Development and validation of a plasma-urine metabolism diagnostic model for renal cell carcinoma using machine learning.

Zhenkun Dong, Kun Zhai, Bingzhi Geng, Qiang Li, Zhaodu Liu, Fei Shi, Yun He, Hui Chen, Yan Cui

Abstract readValidation Study
PubMed Publisher
In one paragraph

Article in World journal of urology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Trial
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Zhenkun Dong *Department of Urology, Harbin Medical University Cancer Hospital, 150 Haping Road, Harbin, 150081, Heilongjiang, China.
Kun Zhai *Department of Urology, Harbin Medical University Cancer Hospital, 150 Haping Road, Harbin, 150081, Heilongjiang, China.
Bingzhi GengDepartment of Urology, Harbin Medical University Cancer Hospital, 150 Haping Road, Harbin, 150081, Heilongjiang, China.
Qiang LiDepartment of Urology, Harbin Medical University Cancer Hospital, 150 Haping Road, Harbin, 150081, Heilongjiang, China.
Zhaodu LiuDepartment of Urology, Harbin Medical University Cancer Hospital, 150 Haping Road, Harbin, 150081, Heilongjiang, China.
Fei ShiMetanotitia Inc., Building C4, Science and Technology Innovation Headquarters, Shenzhen (Harbin) Industrial Park, 288 Zhigu Street, Songbei District, Shenzhen, 150029, China.
Yun HeMetanotitia Inc., Building C4, Science and Technology Innovation Headquarters, Shenzhen (Harbin) Industrial Park, 288 Zhigu Street, Songbei District, Shenzhen, 150029, China. yun.he@metanotitia.com.
Hui ChenDepartment of Urology, Harbin Medical University Cancer Hospital, 150 Haping Road, Harbin, 150081, Heilongjiang, China. hui_chenhmu@hrbmu.edu.cn.
Yan CuiDepartment of Urology, Harbin Medical University Cancer Hospital, 150 Haping Road, Harbin, 150081, Heilongjiang, China. drcui1981@hrbmu.edu.cn.

Funding

Beijing Dadi Medical Charity Foundation DDYL-A-KT-20241107-0107Beijing Medical Award Foundation YXJL-2020-1207-0811Postdoctoral Scientific Research Development Fund of Heilongjiang LBH-Q21130
6 · The paper itself

Abstract

backgroundRenal cell carcinoma (RCC), which accounts for 70-90% of kidney malignancies, remains difficult to diagnose early due to its asymptomatic onset and the lack of reliable biomarkers. This study aimed to develop a robust diagnostic model by integrating plasma and urine metabolomics profiling.

methodsA total of 482 plasma and 434 urine samples from RCC patients, benign renal disease cases, other urological cancers, and healthy controls were analyzed using multi-platform mass spectrometry. Participants were assigned to a discovery or validation cohort to identify RCC-specific metabolites and construct diagnostic models.

resultsTwenty-six plasma and twelve urine metabolites were selected to build individual models. The integrated plasma-urine model achieved superior diagnostic accuracy (AUC = 0.88) compared with plasma (AUC = 0.86) and urine (AUC = 0.78) models in the validation cohort, with notably improved sensitivity for early-stage RCC. In asymptomatic screening populations, it performed excellently (AUC = 0.94) and maintained high specificity, yielding significantly lower scores for other cancer types (p < 0.01). Pathway analysis identified glycine, serine, and threonine metabolism as the key dysregulated pathway shared across plasma and urine, suggesting a potential therapeutic target.

conclusionThis study demonstrates that integrating plasma and urine metabolomics with machine learning yields a robust, non-invasive diagnostic model for renal cell carcinoma. The combined plasma-urine panel outperformed single-fluid models, achieving high accuracy and specificity, and maintained stable performance across tumor stages, grades, and clinical subgroups. The identified metabolic signatures, particularly alterations in glycine-serine-threonine metabolism pathway, provide novel insights into RCC metabolic reprogramming. These findings support the model's potential for early detection and clinical application, while also offering a basis for future therapeutic exploration.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsMachine LearningMetabolomicsAdultAgedBiomarkers, TumorFemaleHumansMaleMiddle AgedBiomarkers, TumorBiomarkersEarly diagnosisMachine learningMetabolomicsRenal cell carcinoma

Identifiers

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.