Evidence map›Paper›PMID 41366679›Full record

ArticleMicrobial cell factories2025

Rewiring central metabolism in Komagataella phaffii for efficient mannose synthesis.

Sijia Zhao, Yuheng Wang, Qian Li, Jiachen Xie, Xinxin Xu, Wei Zhang, Jie Zhang, Bo Liu

Abstract read
In one paragraph

Article in Microbial cell factories, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sijia Zhao *State Key Laboratory of Animal Nutrition, Institute of Animal Science, Chinese Academy of Agricultural Sciences, No.2 Yuanmingyuan West Road, Haidian district, Beijing, 100193, China.
Yuheng Wang *State Key Laboratory of Animal Nutrition, Institute of Animal Science, Chinese Academy of Agricultural Sciences, No.2 Yuanmingyuan West Road, Haidian district, Beijing, 100193, China.
Qian Li *Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, No.12 Zhongguancun South St., Haidian district, Beijing, 100081, China.
Jiachen XieBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, No.12 Zhongguancun South St., Haidian district, Beijing, 100081, China.
Xinxin XuBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, No.12 Zhongguancun South St., Haidian district, Beijing, 100081, China.
Wei ZhangBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, No.12 Zhongguancun South St., Haidian district, Beijing, 100081, China.
Jie ZhangState Key Laboratory of Animal Nutrition, Institute of Animal Science, Chinese Academy of Agricultural Sciences, No.2 Yuanmingyuan West Road, Haidian district, Beijing, 100193, China. Zhangjie09@caas.cn.
Bo LiuBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, No.12 Zhongguancun South St., Haidian district, Beijing, 100081, China. liubo01@caas.cn.

Funding

The Agricultural Science and Technology Innovation Program CAAS-ZDRW202304The China Agriculture Research System of MOF and MARA CARS-41The National Key Research and Development Program of China 2021YFA0910602The National Natural Science Foundation of China 32472951
6 · The paper itself

Abstract

backgroundMannose has wide-ranging applications but microbial fermentation remains underdeveloped compared to biotransformation for its production. The yeast Komagataella phaffii stands out as a premier synthetic biology platform, renowned for its safety profile and exceptional suitability for high-density fermentation. This established chassis organism is ideally positioned for large-scale mannose production through targeted rewiring of its mannose biosynthetic pathway via metabolic engineering.

resultsK. phaffii was metabolically engineered for efficient mannose production using a dual carbon source system: glycerol for biomass generation and glucose for mannose synthesis. To redirect carbon flux toward fructose-6-phosphate (F6P) accumulation at the glycolytic node, glycolytic flux was attenuated by knocking out the phosphofructokinase II (pfk2) gene and downregulating phosphofructokinase I (pfk1). Simultaneously, pentose phosphate pathway flux was reduced by downregulating glucose-6-phosphate dehydrogenase (zwf1). To enhance mannose biosynthesis, conversion of F6P into mannose was promoted by suppressing phosphomannose isomerase (PAS_chr3_1115) and overexpressing the Escherichia coli-derived phosphatase gene yniC. Additionally, three genes involved in arabinitol and ribitol production (PAS_chr2-2_0019, PAS_chr4_0754, and PAS_chr4_0988) were deleted to suppress byproduct accumulation. The engineered strain achieved ~ 121.1 g/L mannose in high-cell-density, fed-batch fermentation, representing the highest reported titer via microbial fermentation to date.

conclusionsThis study achieved efficient mannose production in K. phaffii by remodeling central metabolism. It not only offers a new route for mannose biosynthesis but also establishes a model framework for engineering K. phaffii to produce other high-value bioactive compounds.

Indexed as

MannoseMetabolic EngineeringSaccharomycetalesBiomassFermentationFructosephosphatesGlucoseGlycerolGlycolysisPentose Phosphate Pathwayfructose-6-phosphateFructosephosphatesGlucoseGlycerolMannoseHigh-cell-density fermentationKomagataella phaffiiMannoseMetabolic engineering

Identifiers

PMID41366679
PMCPMC12801476

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.