ArticleScientific data2025
Chromosome-level genome assembly of the traditional Chinese medical plant Pseudostellaria heterophylla.
Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Pseudostellaria heterophylla (Miq.) Pax, a perennial herb belonging to the Caryophyllaceae family, demonstrates substantial pharmacological value and serves as an ideal model system for studying chasmogamous and cleistogamous (CH-CL) floral dimorphism. In this study, by integrating short-read, PacBio HiFi, Hi-C, and transcriptome sequencing data, we generated a high-quality chromosome-level genome assembly for P. heterophylla. The 2.19 Gb genome exhibits high continuity (scaffold N50 = 144.78 Mb) and completeness (97.83% BUSCO score), with 99.36% sequences anchored to 16 pseudo-chromosomes. Repeat elements constituted 79.41% of the assembled genome, with long terminal repeats accounting for 67.30%. The analysis identified 37,158 protein-coding genes, of which 87.19% (32,397) received functional annotations. This high-quality genome assembly establishes a pivotal foundation for uncovering the genetic mechanisms underlying CH-CL floral differentiation and bioactive compound biosynthesis, while supporting molecular breeding initiatives for this pharmacologically valuable species.
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