Evidence map›Paper›PMID 41397000›Full record

ArticleJournal of visualized experiments : JoVE2025

Enhanced Spatial Mapping of Mouse Gastric Muscle Layers Using a Modified Swiss Roll Technique.

Nick M Huynh, Srinidhi R Babu, Egan L Choi, Tamas Ordog, Yujiro Hayashi

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Nick M HuynhEnteric Neuroscience Program and Department of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine and Science; Gastroenterology Research Unit, Division of Gastroenterology and Hepatology, Department of Medicine, Mayo Clinic College of Medicine and Science.
Srinidhi R BabuEnteric Neuroscience Program and Department of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine and Science; Gastroenterology Research Unit, Division of Gastroenterology and Hepatology, Department of Medicine, Mayo Clinic College of Medicine and Science.
Egan L ChoiEnteric Neuroscience Program and Department of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine and Science; Gastroenterology Research Unit, Division of Gastroenterology and Hepatology, Department of Medicine, Mayo Clinic College of Medicine and Science.
Tamas OrdogEnteric Neuroscience Program and Department of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine and Science; Gastroenterology Research Unit, Division of Gastroenterology and Hepatology, Department of Medicine, Mayo Clinic College of Medicine and Science; Division of Gastroenterology and Hepatology, Department of Medicine, Mayo Clinic College of Medicine and Science; ordog.tamas@mayo.edu.
Yujiro HayashiEnteric Neuroscience Program and Department of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine and Science; Gastroenterology Research Unit, Division of Gastroenterology and Hepatology, Department of Medicine, Mayo Clinic College of Medicine and Science; hayashi.yujiro@mayo.edu.

Funding

PILOT AND FEASIBILTY PROGRAMP30DK084567 · NIDDK · MAYO CLINIC ROCHESTER · PI Samar Ibrahim · 2009 to 2026
$22.2M
CALCIUM DYNAMICS IN INTERSTITIAL CELLS OF CAJALR01DK057061 · NIDDK · MAYO CLINIC ROCHESTER · PI GIANRICO FARRUGIA, Tamas Ordog · 2000 to 2026
$8.2M
Epigenetic dysregulation in diabetic enteric neuropathyR01DK126827 · NIDDK · MAYO CLINIC ROCHESTER · PI ORDOG, TAMAS · 2021 to 2024
$2.1M
Single-cell epigenomics and transcriptomics of diabetic gastroparesis in humansR01DK131455 · NIDDK · MAYO CLINIC ROCHESTER · PI BHARUCHA, ADIL E., ORDOG, TAMAS · 2021 to 2025
$2.0M
Novel role of Ezh2 in age-related gastric motility dysfunctionsR01DK121766 · NIDDK · MAYO CLINIC ROCHESTER · PI HAYASHI, YUJIRO NA · 2020 to 2023
$1.4M
NIDDK NIH HHS P30 DK084567NIDDK NIH HHS R01 DK057061NIDDK NIH HHS R01 DK121766NIDDK NIH HHS R01 DK126827NIDDK NIH HHS R01 DK131455
6 · The paper itself

Abstract

Spatial "omics" technologies provide unprecedented opportunities to study the biology and interactions of individual cells of the gastric neuromuscular apparatus in their native tissue environment. However, the successful application of these approaches and the assessment of structural and molecular differences across the fundus, corpus, and antrum require consistent sampling and tissue orientation. Here, we report a modified "Swiss roll" technique tailored to the mouse stomach, which allows all major anatomical regions to be embedded and visualized in a single cryosection. This approach emphasizes flat fixation and careful positioning to generate sections with reproducible orientation and quality. This study also optimized immunofluorescence staining conditions to ensure high-quality visualization of cellular markers. This protocol enables comprehensive, side-by-side comparisons of gastric regions while minimizing tissue loss and experimental variability. By enhancing tissue preservation and spatial orientation, this method offers a practical and scalable tool for researchers studying gastric biology in both physiological and pathological contexts.

Indexed as

CryoultramicrotomyMuscle, SmoothStomachAnimalsMiceMice, Inbred C57BL

Identifiers

PMID41397000
PMCPMC12965773

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.