Evidence map›Paper›PMID 41402291›Full record

ArticleNature communications2025

The ribosome derives the energy to translocate and unwind mRNA from EF-G binding.

Hossein Amiri, William J Van Patten, Gillian Rexroad, Varsha P Desai, Benjamen A Sterwerf, Laura Lancaster, Harry F Noller, Carlos Bustamante

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hossein Amiri *Institute for Quantitative Biosciences-QB3, University of California, Berkeley, CA, USA. mamiri@berkeley.edu.ORCID http://orcid.org/0000-0003-2285-2805
William J Van Patten *Institute for Quantitative Biosciences-QB3, University of California, Berkeley, CA, USA.
Gillian RexroadCenter for Molecular Biology of RNA, University of California, Santa Cruz, CA, USA.
Varsha P DesaiInstitute for Quantitative Biosciences-QB3, University of California, Berkeley, CA, USA.
Benjamen A SterwerfInstitute for Quantitative Biosciences-QB3, University of California, Berkeley, CA, USA.
Laura LancasterCenter for Molecular Biology of RNA, University of California, Santa Cruz, CA, USA.
Harry F NollerCenter for Molecular Biology of RNA, University of California, Santa Cruz, CA, USA. harry@nuvolari.ucsc.edu.
Carlos BustamanteInstitute for Quantitative Biosciences-QB3, University of California, Berkeley, CA, USA. carlosb@berkeley.edu.ORCID http://orcid.org/0000-0002-2970-0073

Funding

Ribosome Structure and FunctionR35GM118156 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI NOLLER, HARRY F · 2016 to 2025
$7.8M
THE PHYSICAL CHEMISTRY OF NUCLEIC ACIDSR01GM032543 · NIGMS · UNIVERSITY OF OREGON · PI CARLOS Jose BUSTAMANTE · 1985 to 2026
$6.4M
Mechanisms of Viral DNA PackagingR01GM071552 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BUSTAMANTE, CARLOS JOSE · 2004 to 2015
$4.7M
NIGMS NIH HHS R01 GM032543NIGMS NIH HHS R01 GM071552NIGMS NIH HHS R35 GM118156U.S. Department of Energy (DOE) DE-AC02-05CH11231U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM032543U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM071552U.S. Department of Health & Human Services | National Institutes of Health (NIH) R35-GM118156
6 · The paper itself

Abstract

The GTPase EF-G catalyzes translocation of mRNA and tRNAs relative to the ribosome and helps maintain the reading frame during protein synthesis. Which events directly require EF-G-mediated GTP hydrolysis during translocation are still debated. Using high-resolution optical tweezers endowed with single-molecule fluorescence detection, we simultaneously monitored binding of fluorescently-labeled EF-G to ribosomes and either mRNA unwinding or mRNA translocation relative to the body domain of the small ribosomal subunit. Using EF-G mutants and GTP analogs, we find that neither mRNA unwinding nor translocation require GTP hydrolysis and that these are independent events that may or may not temporally coincide. We propose that "tight binding" of EF-G to the ribosome triggers mRNA unwinding and translocation of mRNA relative to the 30S body domain and that while GTP hydrolysis kinetically accelerates translocation, it is thermodynamically required only to liberate the tightly bound EF-G from the ribosome.

Indexed as

Peptide Elongation Factor GRibosomesRNA, MessengerEscherichia coliGuanosine TriphosphateHydrolysisKineticsOptical TweezersProtein BindingProtein BiosynthesisRNA, TransferGuanosine TriphosphatePeptide Elongation Factor GRNA, MessengerRNA, Transfer

Identifiers

PMID41402291
PMCPMC12775393

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.