Evidence mapPaperPMID 41407613Full record

ReviewTrends in genetics : TIG2026

The 3D genome during germline development and meiosis.

Yuka Kitamura, Satoshi H Namekawa

Abstract readReview
In one paragraph

Review in Trends in genetics : TIG, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yuka KitamuraDepartment of Microbiology and Molecular Genetics, University of California, Davis, Davis, CA 95616, USA. Electronic address: ykitamura@ucdavis.edu.
Satoshi H NamekawaDepartment of Microbiology and Molecular Genetics, University of California, Davis, Davis, CA 95616, USA. Electronic address: snamekawa@ucdavis.edu.

Funding

Epigenetic gene regulations in the germlineR35GM141085 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Satoshi Namekawa · 2021 to 2026
$4.4M
3D genome-based transcriptional program for male germline differentiationK99HD119268 · NICHD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Yuka Kitamura · 2025 to 2026
$258k
NICHD NIH HHS K99 HD119268NIGMS NIH HHS R35 GM141085
6 · The paper itself

Abstract

Germ cell development involves extensive remodeling of the 3D genome architecture, which is tightly coupled to transcriptional programs, meiotic chromosome dynamics, and re-establishment of totipotency in the next generation. Recent advances in chromosome conformation capture methods have uncovered stage-specific alterations in chromosome organization during spermatogenesis and oogenesis, including germline-specific 3D genome features. These distinctive nuclear configurations orchestrate gene expression programs essential for each developmental stage and meiosis, contribute to epigenetic inheritance, and shape genome evolution. In this review, we synthesize recent progress in understanding 3D genome organization in male and female germlines, and highlight emerging principles, unresolved questions, and innovative approaches that will advance our understanding of germline biology and the principles of genome architecture.

Indexed as

GenomeGerm CellsMeiosisAnimalsChromosomesEpigenesis, GeneticFemaleHumansMaleOogenesisSpermatogenesis3D genomeepigenetic priminggerm cellsgermlinemeiosisoogenesisspermatogenesis

Identifiers

PMID41407613
PMCPMC13154170

What Socratic holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.