Evidence map›Paper›PMID 41408141›Full record

ArticleBMC plant biology2025

Raffinose induces autophagy to promote the growth of Arabidopsis Thaliana.

Sahar Magen, Sahar Daniel, Shahar Weiss, Avital Kreisberg Nitzav, David J Factor, Sergey Mursalimov, Hala Khamesa-Israelov, Yoram Soroka, Simon Michaeli, Tamar Avin-Wittenberg

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Can autophagy enhance crop resilience to environmental stress?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sahar MagenDepartment of Plant and Environmental Sciences, Alexander Silberman Institute of Life Sciences, Edmond Safra Campus, The Hebrew University of Jerusalem, Jerusalem, Israel.
Sahar DanielDepartment of Plant and Environmental Sciences, Alexander Silberman Institute of Life Sciences, Edmond Safra Campus, The Hebrew University of Jerusalem, Jerusalem, Israel.
Shahar WeissDepartment of Plant and Environmental Sciences, Alexander Silberman Institute of Life Sciences, Edmond Safra Campus, The Hebrew University of Jerusalem, Jerusalem, Israel.
Avital Kreisberg NitzavDepartment of Plant and Environmental Sciences, Alexander Silberman Institute of Life Sciences, Edmond Safra Campus, The Hebrew University of Jerusalem, Jerusalem, Israel.
David J FactorDepartment of Plant and Environmental Sciences, Alexander Silberman Institute of Life Sciences, Edmond Safra Campus, The Hebrew University of Jerusalem, Jerusalem, Israel.
Sergey MursalimovDepartment of Postharvest Sciences, Institute of Postharvest and Food Sciences, Agricultural Research Organization (ARO), Volcani Institute, Rishon LeZion, Israel.
Hala Khamesa-IsraelovDepartment of Postharvest Sciences, Institute of Postharvest and Food Sciences, Agricultural Research Organization (ARO), Volcani Institute, Rishon LeZion, Israel.
Yoram SorokaDepartment of Plant and Environmental Sciences, Alexander Silberman Institute of Life Sciences, Edmond Safra Campus, The Hebrew University of Jerusalem, Jerusalem, Israel.
Simon MichaeliDepartment of Postharvest Sciences, Institute of Postharvest and Food Sciences, Agricultural Research Organization (ARO), Volcani Institute, Rishon LeZion, Israel.
Tamar Avin-WittenbergDepartment of Plant and Environmental Sciences, Alexander Silberman Institute of Life Sciences, Edmond Safra Campus, The Hebrew University of Jerusalem, Jerusalem, Israel. tamar.avin-wittenberg@mail.huji.ac.il.

Funding

Israel Science Foundation 1318/24Ministry of Agriculture and Rural Development 12-16-0009
6 · The paper itself

Abstract

backgroundPlant growth depends on the integration of environmental signals and nutrient availability. Under stress conditions, growth is often attenuated to prioritise defense, creating a trade-off between growth and stress responses. Autophagy, a conserved degradation and recycling mechanism in eukaryotes, plays a central role in maintaining cellular homeostasis during stress. Enhancing autophagy has been shown to improve growth, yield, and stress tolerance in plants, yet the molecular triggers that initiate this process are not fully understood.

resultsWe identified raffinose, a plant-derived sugar associated with stress responses, as a novel inducer of autophagy in plants. Exogenous application of raffinose stimulated autophagic activity and promoted biomass accumulation and seed yield in an autophagy-dependent manner across multiple plant species. Mechanistic analysis revealed that raffinose activates autophagy through SnRK1 in a TOR-independent manner, and that it upregulates the expression of autophagy-related genes ATG5 and ATG7. The growth-promoting effect of raffinose was specific and not replicated by equivalent carbon supplementation with glucose, while the raffinose precursor galactinol showed similar autophagy-dependent growth enhancement. Finally, we pointed to possible downstream candidates operating autophagy-related biomass accumulation, as identified by metabolic profiling.

conclusionsOur findings position raffinose as a signalling molecule capable of activating autophagy and enhancing plant growth and yield in a targeted, species-conserved manner. By linking a stress-associated sugar to the activation of a central catabolic pathway, this work reveals a potential mechanism by which plants may optimise the balance between growth and defense. Understanding raffinose-mediated autophagy induction can potentially provide new opportunities for developing strategies to improve crop performance under variable environmental conditions.

Indexed as

ArabidopsisAutophagyRaffinoseArabidopsis ProteinsGene Expression Regulation, PlantArabidopsis ProteinsRaffinoseArabidopsis thalianaAutophagyRaffinoseSnRK1TORC

Identifiers

PMID41408141
PMCPMC12825231

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.