Evidence map›Paper›PMID 41423452›Full record

ArticleNature communications2025

Deep Mutational Scanning of FDX1 Identifies Key Structural Determinants of Lipoylation and Cuproptosis.

Jeffrey C Hsiao, Douglas M Warui, Jason J Kwon, Margaret B Dreishpoon, Nolan R Bick, Tamra Blue-Lahom, David E Root, Squire J Booker, Peter Tsvetkov

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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  6. From copper imbalance to immunometabolic remodeling: cuproptosis-related vulnerability and therapeutic hypotheses in autoimmune diseases.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jeffrey C Hsiao *Department of Pathology and Cancer Center, Beth Israel Deaconess Medical Center, Boston, MA, USA.
Douglas M Warui *Department of Chemistry, The Pennsylvania State University, University Park, PA, USA.
Jason J KwonBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Margaret B DreishpoonDepartment of Pathology and Cancer Center, Beth Israel Deaconess Medical Center, Boston, MA, USA.
Nolan R BickBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-8963-7304
Tamra Blue-LahomDepartment of Chemistry, The Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0002-4026-7274
David E RootBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-5122-861X
Squire J BookerDepartment of Chemistry, The Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0002-7211-5937
Peter TsvetkovDepartment of Pathology and Cancer Center, Beth Israel Deaconess Medical Center, Boston, MA, USA. ptsvetko@bidmc.harvard.edu.ORCID http://orcid.org/0000-0002-7577-2342

Funding

Radical Mechanisms of Iron-Sulfur ProteinsR35GM122595 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI SQUIRE J. BOOKER · 2017 to 2026
$3.4M
Mechanisms Promoting Copper Dependent Cell Death in CancerR01CA279550 · NCI · BROAD INSTITUTE, INC. · PI Sandro Santagata, Peter Tsvetkov · 2023 to 2026
$2.4M
Characterization of metal cofactors involved in GDGT-MAS Csp3-Csp3 bond formationF32GM157879 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Tamra Carlicia Mbeuh Lahom Lot · 2025 to 2026
$152k
NCI NIH HHS R01 CA279550NIGMS NIH HHS F32 GM157879NIGMS NIH HHS R35 GM122595NSF | BIO | Division of Molecular and Cellular Biosciences (MCB) MCB-1716686U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA279550U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM-122595
6 · The paper itself

Abstract

Cuproptosis is a recently described form of regulated cell death triggered by ionophore-induced copper (Cu) overload in mitochondria. It is critically dependent on ferredoxin 1 (FDX1), a mitochondrial iron-sulfur cluster containing protein that acts as an electron shuttle. FDX1 reduces ionophore-bound Cu(II) to Cu(I), thereby triggering its release, and promotes mitochondrial protein lipoylation, which is directly targeted by the released copper to drive cell death. Despite the pivotal role of FDX1 in cuproptosis, the structural determinants underlying its distinct functions remain unclear. To address this, we performed deep mutational scanning on FDX1 and find that two conserved solvent-exposed residues, D136 and D139, on alpha helix 3 are essential for both cuproptosis and lipoylation. Charge-reversal mutations at these positions abolish FDX1's ability to induce cuproptosis and support lipoylation in cells, despite retaining full enzymatic activity in vitro. Guided by structural and genomic analyses, we further identify dihydrolipoamide dehydrogenase (DLD), the E3 subunit of lipoylated complexes as an alternative FDX1 reductase both in cells and in vitro. Together, these findings establish the acidic alpha helix 3 of FDX1 as a critical interface for its upstream regulation and suggest that FDX1's roles in cuproptosis and in lipoylation are both structurally and functionally linked.

Indexed as

CopperFerredoxinsLipoylationHumansMitochondriaMutationCopperFerredoxins

Identifiers

PMID41423452
PMCPMC12855868

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.