Evidence map›Paper›PMID 41427408›Full record

ArticlebioRxiv : the preprint server for biology2025

Landscape Expansion Microscopy Reveals Interactions between Membrane and Phase-Separated Organelles.

Yinyin Zhuang, Zhao Zhang, Zhipeng Dai, Xiaoyu Shi

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Yinyin ZhuangDepartment of Developmental and Cell Biology, University of California, Irvine; Irvine, CA 92697, United States.
Zhao ZhangDepartment of Developmental and Cell Biology, University of California, Irvine; Irvine, CA 92697, United States.
Zhipeng DaiDepartment of Developmental and Cell Biology, University of California, Irvine; Irvine, CA 92697, United States.
Xiaoyu ShiDepartment of Developmental and Cell Biology, University of California, Irvine; Irvine, CA 92697, United States.ORCID 0000-0002-9634-2659

Funding

Gel-based Optical-isolation Single-Cell 3D Spatial MultiomicsDP2GM150017 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI SHI, XIAOYU · 2022 to 2025
$2.6M
NIGMS NIH HHS DP2 GM150017
6 · The paper itself

Abstract

Landscape Expansion Microscopy (land-ExM) is a light microscopy technique that visualizes both lipid and protein ultrastructural context of cells. Achieving this level of detail requires both superresolution and a high signal-to-noise ratio. Although expansion microscopy (ExM) provides superresolution, obtaining high signal-to-noise images of both proteins and lipids remains challenging. Land-ExM overcomes this limitation by using self-retention trifunctional anchors to significantly enhance protein and lipid signals in expanded samples. This improvement enables the accurate visualization of diverse membrane organelles and phase separations, as well as the three-dimensional visualization of their contact sites. As a demonstration, we revealed triple-organellar contact sites among the stress granule, the nuclear tunnel, and the nucleolus. Overall, land-ExM offers a high-contrast superresolution platform that advances our understanding of how cells spatially coordinate interactions between membrane organelles and phase separations.

Indexed as

contact sitesExpansion microscopynuclear tunnelnucleolusorganelle-organelle interactionphase separationstress granule

Identifiers

PMID41427408
PMCPMC12714020

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.