Evidence map›Paper›PMID 41436476›Full record

ArticleNature communications2025

Temporal gene regulation enables controlled expression of gas vesicles and preserves bacterial viability.

Zongru Li, Chia-Yu Ho, Diana E Barr, Sumin Jeong, Lihua Ma, George J Lu

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Zongru LiDepartment of Bioengineering, Rice University, Houston, TX, USA.ORCID http://orcid.org/0000-0003-1918-9707
Chia-Yu HoDepartment of Bioengineering, Rice University, Houston, TX, USA.
Diana E BarrDepartment of Bioengineering, Rice University, Houston, TX, USA.
Sumin JeongDepartment of Bioengineering, Rice University, Houston, TX, USA.ORCID http://orcid.org/0009-0005-4988-7751
Lihua MaShared Equipment Authority, Rice University, Houston, TX, USA.
George J LuDepartment of Bioengineering, Rice University, Houston, TX, USA. george.lu@rice.edu.ORCID http://orcid.org/0000-0002-4689-9686

Funding

Interdisciplinary Translational Pre/Postdoctoral Program in Cancer NanotechnologyT32CA196561 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Gang Bao, Konstantin V Sokolov · 2015 to 2026
$3.0M
Next-generation design of acoustic reporter genes with optimal assemblyR35GM155015 · NIGMS · RICE UNIVERSITY · PI George J Lu · 2024 to 2026
$1.1M
Ultrasensitive acoustic reporter proteins with engineered rupture-resistant shellsR21EB033607 · NIBIB · RICE UNIVERSITY · PI LU, GEORGE J · 2022 to 2024
$609k
Cancer Prevention and Research Institute of Texas (Cancer Prevention Research Institute of Texas) RR190081G. Harold and Leila Y. Mathers Foundation (G. Harold & Leila Y. Mathers Foundation) MF-2012-01314NCI NIH HHS T32 CA196561NIBIB NIH HHS R21 EB033607NIGMS NIH HHS R35 GM155015United States Department of Defense | Defense Advanced Research Projects Agency (DARPA) HR00112420377U.S. Department of Health & Human Services | NIH | National Institute of Biomedical Imaging and Bioengineering (NIBIB) R21EB033607U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM155015Welch Foundation C-2069Welch Foundation C-2249
6 · The paper itself

Abstract

Gas vesicles (GVs) are genetically encodable, air-filled protein nanostructures that have rapidly emerged as a versatile platform for biomedical imaging, cell tracking, and therapeutic delivery. However, in non-native hosts such as Escherichia coli, heterologous expression is hampered by a complex assembly involving ~10 proteins, provoking proteotoxic stress and impaired growth. Here we report a reproducible drop in cell density and viability 8-16 h after GV induction. To address these, we develop a dual-inducer transcriptional system that orthogonally controls assembly factors and the shell protein GvpA2 over a range of stoichiometries. Sequential expression by initiating assembly factors before GvpA2 restores growth without compromising GV production. We further show that the interval between inductions tunes both GV yield and cellular stress. Orthogonal decoupling plus a ~2-3 h head-start for assembly factors prevents proteotoxicity, preserves yields, and restores viability, establishing a generalizable temporal-stoichiometric design for heterologous expression of multimeric protein nanostructures.

Indexed as

Escherichia coliGene Expression Regulation, BacterialMicrobial ViabilityEscherichia coli ProteinsNanostructuresEscherichia coli Proteins

Identifiers

PMID41436476
PMCPMC12848028

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.