Evidence map›Paper›PMID 41446143›Full record

ArticlebioRxiv : the preprint server for biology2025

Chemical modulation of chloroplast de- and re-differentiation reveals a role for the SAL1-PAP retrograde pathway in facilitating plastid transitions.

Pablo Perez-Colao, Jacobo Cruces, Santiago Perez-Rodriguez, Anna Koprivova, Stanislav Kopriva, Aleksandra Skirycz, Jorge Lozano-Juste, Manuel Rodriguez-Concepcion

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Pablo Perez-ColaoInstitute for Plant Molecular and Cell Biology (IBMCP), CSIC-Universitat Politècnica de València, 46022 Valencia, Spain.
Jacobo CrucesGalChimia S.A., Parque Empresarial de Touro, Parcelas 26-27, Fonte Díaz, 15822 Touro, A Coruña, Spain.
Santiago Perez-RodriguezGalChimia S.A., Parque Empresarial de Touro, Parcelas 26-27, Fonte Díaz, 15822 Touro, A Coruña, Spain.
Anna KoprivovaInstitute for Plant Sciences, Cluster of Excellence on Plant Sciences, University of Cologne, 50674, Cologne, Germany.
Stanislav KoprivaInstitute for Plant Sciences, Cluster of Excellence on Plant Sciences, University of Cologne, 50674, Cologne, Germany.ORCID 0000-0002-7416-6551
Aleksandra SkiryczMichigan State University, East Lansing, MI 48824, USA.ORCID 0000-0002-7627-7925
Jorge Lozano-JusteInstitute for Plant Molecular and Cell Biology (IBMCP), CSIC-Universitat Politècnica de València, 46022 Valencia, Spain.
Manuel Rodriguez-ConcepcionInstitute for Plant Molecular and Cell Biology (IBMCP), CSIC-Universitat Politècnica de València, 46022 Valencia, Spain.ORCID 0000-0002-1280-2305

Funding

Protein-metabolite interaction networks for functional characterization of metabolites.R35GM153298 · NIGMS · MICHIGAN STATE UNIVERSITY · PI Aleksandra Skirycz · 2024 to 2026
$1.2M
NIGMS NIH HHS R35 GM153298
6 · The paper itself

Abstract

Plastids are dynamic organelles that remodel their composition, ultrastructure, and function according to developmental and environmental demands. The synthetic molecule X57 induces the conversion of leaf chloroplasts into tocopherol-rich plastids lacking thylakoids and containing proliferating plastoglobules. Removal of X57 triggers chloroplast re-differentiation, enabling precise spatial-temporal dissection of these transitions. X57 directly binds and inhibits the phosphatase SAL1, causing accumulation of its substrate 3'-phosphoadenosine 5'-phosphate (PAP), a retrograde signal that modulates nuclear gene expression. SAL1 inhibition and subsequent PAP accumulation activate a cascade that depletes cytokinins and down-regulates GOLDEN2-LIKE1 (GLK1) and other transcription factors involved in chloroplast biogenesis. SAL1-defective mutants fail to undergo this signaling pathway. The SAL1-PAP-mediated weakening of chloroplast identity preconditions plastids for their eventual conversion into storage-type organelles upon X57-promoted accumulation of tocopherols. After X57 withdrawal, photosynthetic gene expression and chloroplast functions are restored. This framework identifies key molecular mechanisms underlying chloroplast plasticity, a central process in biology.

Identifiers

PMID41446143
PMCPMC12724659

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.